@@ -2526,6 +2526,37 @@ contains a number of utilities to explore the MS/MS results and assess missed
and irregular enzymatic cleavages, mass measurement accuracy, etc.")
(license license:artistic2.0)))
+(define-public r-mzid
+ (package
+ (name "r-mzid")
+ (version "1.28.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "mzID" version))
+ (sha256
+ (base32
+ "0s7d6cz1li7v3ni6n6hrdspl93yiyr283kmbbd3hhkfgzgx6kpq2"))))
+ (properties `((upstream-name . "mzID")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-doparallel" ,r-doparallel)
+ ("r-foreach" ,r-foreach)
+ ("r-iterators" ,r-iterators)
+ ("r-plyr" ,r-plyr)
+ ("r-protgenerics" ,r-protgenerics)
+ ("r-xml" ,r-xml)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
+ (home-page "https://bioconductor.org/packages/mzID")
+ (synopsis "Parser for mzIdentML files")
+ (description
+ "This package provides a parser for mzIdentML files implemented using the
+XML package. The parser tries to be general and able to handle all types of
+mzIdentML files with the drawback of having less pretty output than a vendor
+specific parser.")
+ (license license:gpl2+)))
+
(define-public r-pcamethods
(package
(name "r-pcamethods")
@@ -9022,37 +9022,6 @@ their variance is independent of the mean, and they are usually more sensitive
and specific in detecting differential transcription.")
(license license:artistic2.0)))
-(define-public r-mzid
- (package
- (name "r-mzid")
- (version "1.28.0")
- (source
- (origin
- (method url-fetch)
- (uri (bioconductor-uri "mzID" version))
- (sha256
- (base32
- "0s7d6cz1li7v3ni6n6hrdspl93yiyr283kmbbd3hhkfgzgx6kpq2"))))
- (properties `((upstream-name . "mzID")))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-doparallel" ,r-doparallel)
- ("r-foreach" ,r-foreach)
- ("r-iterators" ,r-iterators)
- ("r-plyr" ,r-plyr)
- ("r-protgenerics" ,r-protgenerics)
- ("r-xml" ,r-xml)))
- (native-inputs
- `(("r-knitr" ,r-knitr)))
- (home-page "https://bioconductor.org/packages/mzID")
- (synopsis "Parser for mzIdentML files")
- (description
- "This package provides a parser for mzIdentML files implemented using the
-XML package. The parser tries to be general and able to handle all types of
-mzIdentML files with the drawback of having less pretty output than a vendor
-specific parser.")
- (license license:gpl2+)))
-
(define-public r-aroma-light
(package
(name "r-aroma-light")