@@ -20,10 +20,12 @@
#:use-module ((guix licenses) #:prefix license:)
#:use-module (guix packages)
#:use-module (guix download)
+ #:use-module (guix git-download)
#:use-module (guix build-system cmake)
#:use-module (guix utils)
#:use-module (gnu packages)
#:use-module (gnu packages backup)
+ #:use-module (gnu packages base)
#:use-module (gnu packages boost)
#:use-module (gnu packages check)
#:use-module (gnu packages compression)
@@ -34,6 +36,7 @@
#:use-module (gnu packages linux)
#:use-module (gnu packages llvm)
#:use-module (gnu packages logging)
+ #:use-module (gnu packages man)
#:use-module (gnu packages networking)
#:use-module (gnu packages pretty-print)
#:use-module (gnu packages python)
@@ -198,3 +201,137 @@ management software. iRODS virtualizes data storage resources, so users can
take control of their data, regardless of where and on what device the data is
stored.")
(license license:bsd-3)))
+
+(define-public irods-client-icommands
+ (package
+ (name "irods-client-icommands")
+ (version "4.2.8")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/irods/irods_client_icommands")
+ (commit version)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "069n647p5ypf44gim8z26mwayg5lzgk7r9qyyqd8f9n7h0p4jxpn"))))
+ (build-system cmake-build-system)
+ (arguments
+ `(#:tests? #false ; not clear how to run tests
+ #:configure-flags
+ (list
+ "-DCMAKE_BUILD_TYPE=Release"
+
+ ;; Configuration attempts to guess the distribution with Python.
+ "-DIRODS_LINUX_DISTRIBUTION_NAME=guix"
+ "-DIRODS_LINUX_DISTRIBUTION_VERSION_MAJOR=1"
+
+ (string-append "-DIRODS_DIR="
+ (assoc-ref %build-inputs "irods")
+ "/lib/irods/cmake")
+ (string-append "-DIRODS_EXTERNALS_FULLPATH_CLANG="
+ (assoc-ref %build-inputs "clang"))
+ (string-append "-DIRODS_EXTERNALS_FULLPATH_CLANG_RUNTIME="
+ (assoc-ref %build-inputs "clang-runtime"))
+ (string-append "-DIRODS_EXTERNALS_FULLPATH_CPPZMQ="
+ (assoc-ref %build-inputs "cppzmq"))
+ (string-append "-DIRODS_EXTERNALS_FULLPATH_ARCHIVE="
+ (assoc-ref %build-inputs "libarchive"))
+ (string-append "-DIRODS_EXTERNALS_FULLPATH_AVRO="
+ (assoc-ref %build-inputs "avro-cpp"))
+ (string-append "-DIRODS_EXTERNALS_FULLPATH_BOOST="
+ (assoc-ref %build-inputs "boost"))
+ (string-append "-DIRODS_EXTERNALS_FULLPATH_ZMQ="
+ (assoc-ref %build-inputs "zeromq"))
+ (string-append "-DIRODS_EXTERNALS_FULLPATH_JSON="
+ (assoc-ref %build-inputs "json"))
+ (string-append "-DIRODS_EXTERNALS_FULLPATH_FMT="
+ (assoc-ref %build-inputs "fmt")))
+
+ #:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'unset-Werror ;
+ (lambda _ ;
+ ;; -Werror kills the build due to a deprecation warning
+ (substitute* "CMakeLists.txt" ;
+ (("-Werror") ""))))
+ (add-after 'unpack 'remove-/usr-prefix
+ (lambda _
+ (substitute* "CMakeLists.txt"
+ (("usr/") ""))))
+ (add-after 'set-paths 'adjust-CPLUS_INCLUDE_PATH
+ (lambda* (#:key inputs #:allow-other-keys)
+ (let ((gcc (assoc-ref inputs "gcc")))
+ (setenv "CPLUS_INCLUDE_PATH"
+ (string-join
+ (cons* (string-append (assoc-ref inputs "libcxx+libcxxabi")
+ "/include/c++/v1")
+ (string-append (assoc-ref inputs "json")
+ "/include/nlohmann")
+ ;; Hide GCC's C++ headers so that they do not interfere with
+ ;; the Clang headers.
+ (delete (string-append gcc "/include/c++")
+ (string-split (getenv "CPLUS_INCLUDE_PATH")
+ #\:)))
+ ":"))
+ (format #true
+ "environment variable `CPLUS_INCLUDE_PATH' changed to ~a~%"
+ (getenv "CPLUS_INCLUDE_PATH"))))))))
+ (inputs
+ `(("avro-cpp" ,(package
+ (inherit avro-cpp-1.9)
+ (arguments
+ `(#:configure-flags
+ '("-DCMAKE_CXX_COMPILER=clang++"
+ "-DCMAKE_CXX_FLAGS=-stdlib=libc++"
+ "-DCMAKE_EXE_LINKER_FLAGS=-lc++abi -lz")
+ #:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'chdir
+ (lambda _ (chdir "lang/c++")))
+ (add-after 'set-paths 'adjust-CPLUS_INCLUDE_PATH
+ (lambda* (#:key inputs #:allow-other-keys)
+ (let ((gcc (assoc-ref inputs "gcc")))
+ (setenv "CPLUS_INCLUDE_PATH"
+ (string-join
+ (cons* (string-append (assoc-ref inputs "libcxx+libcxxabi")
+ "/include/c++/v1")
+ ;; Hide GCC's C++ headers so that they do not interfere with
+ ;; the Clang headers.
+ (delete (string-append gcc "/include/c++")
+ (string-split (getenv "CPLUS_INCLUDE_PATH")
+ #\:)))
+ ":"))
+ (format #true
+ "environment variable `CPLUS_INCLUDE_PATH' changed to ~a~%"
+ (getenv "CPLUS_INCLUDE_PATH"))))))))
+ (inputs
+ `(("boost" ,boost-for-irods)
+ ("clang" ,clang-toolchain-6)
+ ("libcxx+libcxxabi" ,libcxx+libcxxabi-6)
+ ("libcxxabi" ,libcxxabi-6)
+ ("snappy" ,snappy-with-clang6)
+ ("zlib" ,zlib)))))
+ ("boost" ,boost-for-irods)
+ ("cppzmq" ,cppzmq)
+ ("fmt" ,fmt-for-irods)
+ ("irods" ,irods)
+ ("json" ,json-modern-cxx)
+ ("libarchive" ,libarchive)
+ ("libcxxabi" ,libcxxabi-6) ; we need this for linking with -lc++abi
+ ("mit-krb5" ,mit-krb5)
+ ("openssl" ,openssl)
+ ("zeromq" ,zeromq)))
+ (native-inputs
+ `(("clang" ,clang-toolchain-6)
+ ("clang-runtime" ,clang-runtime-6)
+ ("libcxx+libcxxabi" ,libcxx+libcxxabi-6)
+ ("help2man" ,help2man)
+ ("which" ,which)))
+ (home-page "https://irods.org")
+ (synopsis "Data management software")
+ (description "The Integrated Rule-Oriented Data System (iRODS) is data
+management software. iRODS virtualizes data storage resources, so users can
+take control of their data, regardless of where and on what device the data is
+stored.")
+ (license license:bsd-3)))