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Resent-From: zimoun Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 15 Mar 2021 18:10:03 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 47171 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 47171@debbugs.gnu.org Cc: zimoun Received: via spool by 47171-submit@debbugs.gnu.org id=B47171.161583177118426 (code B ref 47171); Mon, 15 Mar 2021 18:10:03 +0000 Received: (at 47171) by debbugs.gnu.org; 15 Mar 2021 18:09:31 +0000 Received: from localhost ([127.0.0.1]:36951 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lLrek-0004n2-Tb for submit@debbugs.gnu.org; Mon, 15 Mar 2021 14:09:31 -0400 Received: from mail-wm1-f54.google.com ([209.85.128.54]:38690) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lLree-0004lV-TE for 47171@debbugs.gnu.org; Mon, 15 Mar 2021 14:09:26 -0400 Received: by mail-wm1-f54.google.com with SMTP id m20-20020a7bcb940000b029010cab7e5a9fso20827928wmi.3 for <47171@debbugs.gnu.org>; Mon, 15 Mar 2021 11:09:24 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=j6qoA4rCbZlkriSCPy9bFbT5/GnzcUbNgMlyEaryzhc=; b=OQV5lp4C+0nLqR2aL1NSnypzayn3MSCOmPZJvjVWdsRXPxzKiPjEF/e9LCZy7s+Qxt 0ZfvgVu/zssRO5qBhdwvX7Hq62CqBHkgN21MQzdRTXS3hKSSOwQrQ0pLwSJLY+LcGDxv 2OOevh8OMLIxOqW/0Zc8ukOz26isGbFVJj9cOLysZUnS0MnGPOCUHakkjNSHCUBral0b ixRtQhtmJoEaYkV3y+Df6Qtzo4kYbG5UHSJ/qIBMOKAGLvGaxc0BMESdbikWbUaOqQfH jHBg2idyDRHhRqwT75e6tBKjIk4yNQjJ2CLZGiTEy0/LRLgyQCgN72qV1aopwTEJNPxj cX+g== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=j6qoA4rCbZlkriSCPy9bFbT5/GnzcUbNgMlyEaryzhc=; b=VQ6oT/V5lRPqaeiS0pyrZ/tYr6XRNI8NmlqvdNI4PivBPJ9HeyifT61NUjYLcMR6h0 OOJ0vkqRFYQspfEkSq0w08BERTNqug1vWkVwCxGwLMPcvmoksdJxOCUKWx9sLoWfbbnw aN5C5uNL3lM4znjYyfr0C6OIJcWJfory+YYhrve0fLix7TRI2skzBCUjOZpEzRzl37ZN stN+RjphjLesQRxrcsvlROBKC7lenZ3QOd16o+VI27h+isJTGYdBj7a2/9KRozrOpXOJ IgW1CEOeH0Xo7gpyvT3zzXUDFxOZZbJzwgY2EpTNT9vLqkJJ4fB7PtXiubh6CIVfNwwu YOeA== X-Gm-Message-State: AOAM531SxKXkIurEhN2TpbRclPGHG/ytdDhXhGz02q7XGMW0ScPDtmhz SNbzWCamNJyixeeuyCa1fRxrUOGlWtc= X-Google-Smtp-Source: ABdhPJy1ORa8MYYSSGoSbO828boCWgz4oRRLiwIFJeGKqNcwAahVrNfBfXl4owIlR+bf7RyKEAr+Yw== X-Received: by 2002:a1c:2049:: with SMTP id g70mr885131wmg.7.1615831759346; Mon, 15 Mar 2021 11:09:19 -0700 (PDT) Received: from localhost.localdomain ([193.48.40.110]) by smtp.gmail.com with ESMTPSA id s11sm438851wme.22.2021.03.15.11.09.18 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Mon, 15 Mar 2021 11:09:19 -0700 (PDT) From: zimoun Date: Mon, 15 Mar 2021 19:08:59 +0100 Message-Id: <20210315180904.8346-5-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.30.1 In-Reply-To: <20210315180904.8346-1-zimon.toutoune@gmail.com> References: <20210315180904.8346-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioinformatics.scm (r-annotationdbi): Move from here... * gnu/packages/bioconductor.scm (r-annotationdbi): ...to here. --- gnu/packages/bioconductor.scm | 29 +++++++++++++++++++++++++++++ gnu/packages/bioinformatics.scm | 29 ----------------------------- 2 files changed, 29 insertions(+), 29 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index b7308848c0..2ae212dfac 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1538,6 +1538,35 @@ structure.") microarrays.") (license license:artistic2.0))) +(define-public r-annotationdbi + (package + (name "r-annotationdbi") + (version "1.52.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "AnnotationDbi" version)) + (sha256 + (base32 + "0zqxgh3nx6y8ry12s2vss2f4axz5vpqxha1y4ifhhcx4zhpzsglr")))) + (properties + `((upstream-name . "AnnotationDbi"))) + (build-system r-build-system) + (propagated-inputs + `(("r-biobase" ,r-biobase) + ("r-biocgenerics" ,r-biocgenerics) + ("r-dbi" ,r-dbi) + ("r-iranges" ,r-iranges) + ("r-rsqlite" ,r-rsqlite) + ("r-s4vectors" ,r-s4vectors))) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page "https://bioconductor.org/packages/AnnotationDbi") + (synopsis "Annotation database interface") + (description + "This package provides user interface and database connection code for +annotation data packages using SQLite data storage.") + (license license:artistic2.0))) + (define-public r-annotationforge (package (name "r-annotationforge") diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index b73862ff86..a45196bc5b 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -7691,35 +7691,6 @@ including VCF header and contents in RDF and JSON.") (home-page "https://github.com/vcflib/bio-vcf") (license license:expat))) -(define-public r-annotationdbi - (package - (name "r-annotationdbi") - (version "1.52.0") - (source (origin - (method url-fetch) - (uri (bioconductor-uri "AnnotationDbi" version)) - (sha256 - (base32 - "0zqxgh3nx6y8ry12s2vss2f4axz5vpqxha1y4ifhhcx4zhpzsglr")))) - (properties - `((upstream-name . "AnnotationDbi"))) - (build-system r-build-system) - (propagated-inputs - `(("r-biobase" ,r-biobase) - ("r-biocgenerics" ,r-biocgenerics) - ("r-dbi" ,r-dbi) - ("r-iranges" ,r-iranges) - ("r-rsqlite" ,r-rsqlite) - ("r-s4vectors" ,r-s4vectors))) - (native-inputs - `(("r-knitr" ,r-knitr))) - (home-page "https://bioconductor.org/packages/AnnotationDbi") - (synopsis "Annotation database interface") - (description - "This package provides user interface and database connection code for -annotation data packages using SQLite data storage.") - (license license:artistic2.0))) - (define-public r-biomart (package (name "r-biomart")