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Resent-From: zimoun Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 15 Mar 2021 18:10:03 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 47171 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 47171@debbugs.gnu.org Cc: zimoun Received: via spool by 47171-submit@debbugs.gnu.org id=B47171.161583177118419 (code B ref 47171); Mon, 15 Mar 2021 18:10:03 +0000 Received: (at 47171) by debbugs.gnu.org; 15 Mar 2021 18:09:31 +0000 Received: from localhost ([127.0.0.1]:36949 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lLrek-0004mu-Eg for submit@debbugs.gnu.org; Mon, 15 Mar 2021 14:09:30 -0400 Received: from mail-wm1-f51.google.com ([209.85.128.51]:56273) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lLree-0004lU-75 for 47171@debbugs.gnu.org; Mon, 15 Mar 2021 14:09:24 -0400 Received: by mail-wm1-f51.google.com with SMTP id 12so3647689wmf.5 for <47171@debbugs.gnu.org>; Mon, 15 Mar 2021 11:09:24 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=2VeeyUjjE5n07uG6P7+EsnurFhU9M2CRJ4yNfwn9KI8=; b=a5xqBp6MukKTnWSSCWsVAdnzdGhG9AjNl11BnCNLbKA1IDHFkJFP4wbhNPV06sFb8s hlfcMYjVKq2858K7ljPUyzkndXWFww+IAhGZhoE7zs7WTI8ElTN6qfUc00UVXg9uoqek NmfbQawv2Nd6k9ad03KJgx4nnnT5ZmkC7COvGfR4BH6ILuz3qR++e9hE7tOtJ7QS6Rz4 ZttRvX+kvg+gSDWJ1pVEdYUIzGhVTw5C5aDyKMj+hJRuKtG/pcRmrA5mskBsZsrXyWok gWGG7QQJHcgqqOQnyx4Vnzaga5XDQ63qCpydk0Ue/8iwrlgZqY6m1rYokIe9AqXIkLla 4sDQ== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=2VeeyUjjE5n07uG6P7+EsnurFhU9M2CRJ4yNfwn9KI8=; b=myJubeFplltSBZWWtTey+fT9KXXe3EAgcSpbgqXWHSh38teayokMptzId0rdE29NvZ ElpPOYsHHnPx7xY+CBEN6R58LWVRGCG4BKjbwpM4VA8/f/JPwpWAvNLREhVnGwwTYTZ1 EzT/CaCEtquuPcAG7lR9C2MIxYGY7w9CIkDK2pNhfG8J2VK5dK8geRSJ1K7hJrYMcIQ5 rEwGTE9WZWE3BzZ8QW43hV82q1529s+unuQ9MZVe8bvaAmXTpxJIQ25AVhlTH3VPLiV7 SHs/3blFE0MExJ84k40a7IWPJPa1/3AbrPFn0dDp+PwV6EfrSAWDbmaGp+7zDoikzx9J OUBQ== X-Gm-Message-State: AOAM532DpOaMHj+AZ9VCFX5r86/81HGtnl4sUad65mj9IqbEZ6ghkX2z VsTzrWW1laW4TrzG6v9f/v9OTHbC2a4= X-Google-Smtp-Source: ABdhPJxbFqp7sf8mCa5wpEct1Y/E0UTQq9RgyIP7n2/kmEoGLFxemhznFX9B8aFxIZE5ezCjI/hchw== X-Received: by 2002:a7b:c083:: with SMTP id r3mr848480wmh.177.1615831758777; Mon, 15 Mar 2021 11:09:18 -0700 (PDT) Received: from localhost.localdomain ([193.48.40.110]) by smtp.gmail.com with ESMTPSA id s11sm438851wme.22.2021.03.15.11.09.18 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Mon, 15 Mar 2021 11:09:18 -0700 (PDT) From: zimoun Date: Mon, 15 Mar 2021 19:08:58 +0100 Message-Id: <20210315180904.8346-4-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.30.1 In-Reply-To: <20210315180904.8346-1-zimon.toutoune@gmail.com> References: <20210315180904.8346-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioinformatics.scm (r-biobase): Move from here... * gnu/packages/bioconductor.scm (r-biobase): ...to here. --- gnu/packages/bioconductor.scm | 22 ++++++++++++++++++++++ gnu/packages/bioinformatics.scm | 22 ---------------------- 2 files changed, 22 insertions(+), 22 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index ec273cae70..b7308848c0 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1570,6 +1570,28 @@ microarrays.") databases. Packages produced are intended to be used with AnnotationDbi.") (license license:artistic2.0))) +(define-public r-biobase + (package + (name "r-biobase") + (version "2.50.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "Biobase" version)) + (sha256 + (base32 + "11kgc4flywlm3i18603558l8ksv91c24vkc5fnnbcd375i2dhhd4")))) + (properties + `((upstream-name . "Biobase"))) + (build-system r-build-system) + (propagated-inputs + `(("r-biocgenerics" ,r-biocgenerics))) + (home-page "https://bioconductor.org/packages/Biobase") + (synopsis "Base functions for Bioconductor") + (description + "This package provides functions that are needed by many other packages +on Bioconductor or which replace R functions.") + (license license:artistic2.0))) + (define-public r-category (package (name "r-category") diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 4889c148e4..b73862ff86 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -7691,28 +7691,6 @@ including VCF header and contents in RDF and JSON.") (home-page "https://github.com/vcflib/bio-vcf") (license license:expat))) -(define-public r-biobase - (package - (name "r-biobase") - (version "2.50.0") - (source (origin - (method url-fetch) - (uri (bioconductor-uri "Biobase" version)) - (sha256 - (base32 - "11kgc4flywlm3i18603558l8ksv91c24vkc5fnnbcd375i2dhhd4")))) - (properties - `((upstream-name . "Biobase"))) - (build-system r-build-system) - (propagated-inputs - `(("r-biocgenerics" ,r-biocgenerics))) - (home-page "https://bioconductor.org/packages/Biobase") - (synopsis "Base functions for Bioconductor") - (description - "This package provides functions that are needed by many other packages -on Bioconductor or which replace R functions.") - (license license:artistic2.0))) - (define-public r-annotationdbi (package (name "r-annotationdbi")