From patchwork Mon Mar 15 13:01:27 2021 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Simon Tournier X-Patchwork-Id: 27701 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 48CEE27BC54; Mon, 15 Mar 2021 13:02:15 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.2 (2018-09-13) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.8 required=5.0 tests=BAYES_00,DKIM_ADSP_CUSTOM_MED, DKIM_SIGNED,FREEMAIL_FROM,MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H3, RCVD_IN_MSPIKE_WL,SPF_HELO_PASS,T_DKIM_INVALID,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.2 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id BECD427BC52 for ; Mon, 15 Mar 2021 13:02:14 +0000 (GMT) Received: from localhost ([::1]:37680 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1lLmrM-0002ZO-9U for patchwork@mira.cbaines.net; Mon, 15 Mar 2021 09:02:13 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:59792) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1lLmrD-0002ZE-3M for guix-patches@gnu.org; Mon, 15 Mar 2021 09:02:03 -0400 Received: from debbugs.gnu.org ([209.51.188.43]:51726) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1lLmrC-0006kG-Rq for guix-patches@gnu.org; Mon, 15 Mar 2021 09:02:02 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1lLmrC-00069H-Q1 for guix-patches@gnu.org; Mon, 15 Mar 2021 09:02:02 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#47156] [PATCH 02/10] gnu: r-biocviews: Move to (gnu packages bioconductor). Resent-From: zimoun Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 15 Mar 2021 13:02:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 47156 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 47156@debbugs.gnu.org Cc: zimoun Received: via spool by 47156-submit@debbugs.gnu.org id=B47156.161581331523577 (code B ref 47156); Mon, 15 Mar 2021 13:02:02 +0000 Received: (at 47156) by debbugs.gnu.org; 15 Mar 2021 13:01:55 +0000 Received: from localhost ([127.0.0.1]:35029 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lLmr4-000685-Nb for submit@debbugs.gnu.org; Mon, 15 Mar 2021 09:01:55 -0400 Received: from mail-wm1-f50.google.com ([209.85.128.50]:51028) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lLmr2-00067f-LQ for 47156@debbugs.gnu.org; Mon, 15 Mar 2021 09:01:53 -0400 Received: by mail-wm1-f50.google.com with SMTP id g25so8055814wmh.0 for <47156@debbugs.gnu.org>; Mon, 15 Mar 2021 06:01:52 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=omMJYiCVL2E3Z/tWmTGMzaR/ZOTwUc4d+iQZrtx9dYg=; b=Z5M3yfPe4v/d1LXgs5/u8Pgd6SRhh652I+b8d1C6vwfOSKHKs2fygKR/7GdolBoudi co6rb7bMpQ/GK+jMM9MKqKXVbg7AjAnBQMvE7FWrhWrnCe2cn08Dnf3KgDr5Xd5oaVES eWR/0J8nXWneNlcX/b4hVr70PROD2KKLXIClh+gcdLk+E/stL4BQLi3HrPzA+GhO2z+l u9kzzb5OlovyGDeuhxJysBJmODnQIA3HmP5Y61AubwPxahyVKgqbQ8J4zSAHU7b9zqqj GXqKXjj25Qxi4ORD3WkpGQINsN7dMmjL/eunYQmMv7vxfn4i6bstr2wUDf5szh728gvI tSDA== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=omMJYiCVL2E3Z/tWmTGMzaR/ZOTwUc4d+iQZrtx9dYg=; b=rXbfwkzGhl+EmZSCAxtXU/HSyyBaFS3vOUC39HyIjgsrC9JFU6wcjkJ9rjvkSbhkE/ rJVe0kFUJKhhjQbWLSzjHbHZsDkMUN3EoUJJWKaNpZAD2jhBkEtuc1LK30G0yVA5N8yW e6ro/0kCcPKFYmD4J6VCbHn67lT2eVxqmYJAcqqd+78Q3TRi+BT2b7jJe37HM/YQCn5k bKynKece0DJ3FsjzhzK6RSd5kuxdp8SYnEabjiNkfOIe2Ssld0i4q+IeY1UMmA9FMXpV 2bzKlM2JIVToRTEbFryn6l4A7E49wKwOY9EwASOa7CGhDUAmyqbkoxvYlecT6V2poAl6 VxYg== X-Gm-Message-State: AOAM5331FtCn5r1sn1OUpwvrU4jDehTAZm6OBNJpjiyUeChDtYUWrsbh 9T+TxM8sCRHH8iEtVnge8HV+XT56ijw= X-Google-Smtp-Source: ABdhPJxBFzqowwSwTzo2C/CnHJim1naszhzC7cdEK5df9Z1Iyq9iTBQy7RtmjvYWiqg6RB9LPtMzyg== X-Received: by 2002:a1c:21c3:: with SMTP id h186mr25039485wmh.32.1615813306526; Mon, 15 Mar 2021 06:01:46 -0700 (PDT) Received: from localhost.localdomain ([193.48.40.110]) by smtp.gmail.com with ESMTPSA id f16sm18344646wrt.21.2021.03.15.06.01.45 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Mon, 15 Mar 2021 06:01:45 -0700 (PDT) From: zimoun Date: Mon, 15 Mar 2021 14:01:27 +0100 Message-Id: <20210315130134.30302-2-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.30.1 In-Reply-To: <20210315130134.30302-1-zimon.toutoune@gmail.com> References: <20210315130134.30302-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioinformatics.scm (r-biocviews): Move from here... * gnu/packages/bioconductor.scm (r-biocviews): ...to here. --- gnu/packages/bioconductor.scm | 28 ++++++++++++++++++++++++++++ gnu/packages/bioinformatics.scm | 28 ---------------------------- 2 files changed, 28 insertions(+), 28 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 55f718d5ab..4761474b04 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -8477,6 +8477,34 @@ monograph.") different graph related packages produced by Bioconductor.") (license license:artistic2.0))) +(define-public r-biocviews + (package + (name "r-biocviews") + (version "1.58.1") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "biocViews" version)) + (sha256 + (base32 + "1by2639z7n62z84dr8rj9jz12gsd1k8q42zsnxacxbwfwp6h0cl4")))) + (properties + `((upstream-name . "biocViews"))) + (build-system r-build-system) + (propagated-inputs + `(("r-biobase" ,r-biobase) + ("r-biocmanager" ,r-biocmanager) + ("r-graph" ,r-graph) + ("r-rbgl" ,r-rbgl) + ("r-rcurl" ,r-rcurl) + ("r-xml" ,r-xml) + ("r-runit" ,r-runit))) + (home-page "https://bioconductor.org/packages/biocViews") + (synopsis "Bioconductor package categorization helper") + (description "The purpose of biocViews is to create HTML pages that +categorize packages in a Bioconductor package repository according to keywords, +also known as views, in a controlled vocabulary.") + (license license:artistic2.0))) + (define-public r-experimenthub (package (name "r-experimenthub") diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 20a9385604..cc6e40283b 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -7691,34 +7691,6 @@ including VCF header and contents in RDF and JSON.") (home-page "https://github.com/vcflib/bio-vcf") (license license:expat))) -(define-public r-biocviews - (package - (name "r-biocviews") - (version "1.58.1") - (source (origin - (method url-fetch) - (uri (bioconductor-uri "biocViews" version)) - (sha256 - (base32 - "1by2639z7n62z84dr8rj9jz12gsd1k8q42zsnxacxbwfwp6h0cl4")))) - (properties - `((upstream-name . "biocViews"))) - (build-system r-build-system) - (propagated-inputs - `(("r-biobase" ,r-biobase) - ("r-biocmanager" ,r-biocmanager) - ("r-graph" ,r-graph) - ("r-rbgl" ,r-rbgl) - ("r-rcurl" ,r-rcurl) - ("r-xml" ,r-xml) - ("r-runit" ,r-runit))) - (home-page "https://bioconductor.org/packages/biocViews") - (synopsis "Bioconductor package categorization helper") - (description "The purpose of biocViews is to create HTML pages that -categorize packages in a Bioconductor package repository according to keywords, -also known as views, in a controlled vocabulary.") - (license license:artistic2.0))) - (define-public r-biocstyle (package (name "r-biocstyle")