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References: <20210315125800.30246-1-zimon.toutoune@gmail.com> In-Reply-To: <20210315125800.30246-1-zimon.toutoune@gmail.com> Resent-From: zimoun Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 15 Mar 2021 13:02:04 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 47156 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 47156@debbugs.gnu.org Cc: zimoun Received: via spool by 47156-submit@debbugs.gnu.org id=B47156.161581332323658 (code B ref 47156); Mon, 15 Mar 2021 13:02:04 +0000 Received: (at 47156) by debbugs.gnu.org; 15 Mar 2021 13:02:03 +0000 Received: from localhost ([127.0.0.1]:35042 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lLmrD-00069P-20 for submit@debbugs.gnu.org; Mon, 15 Mar 2021 09:02:03 -0400 Received: from mail-wm1-f51.google.com ([209.85.128.51]:37389) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lLmr6-00067r-M9 for 47156@debbugs.gnu.org; Mon, 15 Mar 2021 09:01:57 -0400 Received: by mail-wm1-f51.google.com with SMTP id f22-20020a7bc8d60000b029010c024a1407so20224263wml.2 for <47156@debbugs.gnu.org>; Mon, 15 Mar 2021 06:01:56 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=from:to:cc:subject:date:message-id:mime-version :content-transfer-encoding; bh=PHRM2lGmgpFY+Fnjv0Taww7I9OQq6F4IjKOWrkgepG4=; b=VLHRNk6LQ6gsqCyjCO9wGYxwYDe/yWzQyMNmWHF6O2f7sYO+u2RyBvrFSDI400vwti MSBNFr1ptfWE6bSPimee9JLMDhH80CtVVY73BRYHGw1RL8J5jk9ZzUESrqCluV7by9aS eMK83JYG0JmtE82GnzERYwhGvR4Zp4A5AUipz4ssnnvXSOKawdxkEPtC9ioakQr6WKqV W2MYo3fdBcoyBMX8xFImM16dQ8OsFXezJ1BX2caNebRf2iEc9wg30Fueqrxw7Ad5HIbN abT7FyoAvE1ghYtZtfLFgM2ggJP8Z/UhYR+Q6Y0QE2RqVnnqMNtxoYwvWmAWXI+us4iE g2Sw== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:mime-version :content-transfer-encoding; bh=PHRM2lGmgpFY+Fnjv0Taww7I9OQq6F4IjKOWrkgepG4=; b=Te8LMdv9eWb6W4kT6XSWeO1R9TuONKUIQBYwkWqfZx23kDfwep2aC+YJClU6Fvg3sJ l4yFN+t56t72VBd+6/inn5xiwa+s8me8m7wVuc4dI7WYlWCUdeXMO3aPi7Y9jp2Lw1h0 3//vf8ozimOJ+HEZPmHbUkO7guNdwZAkKnFZnnOO2YJqgTk3QqLmEWWxoo3Lap38qJiY 2BQclUrxZibVMmCNtuBLwhzT+y0v7koGT3u6V5/+ny3HgfwhhpKA4LXsZGZC4p1MjNjC TJf8oWfab6iMoORHqTFeSvnjl6UgD6QpHPsGKJ5yWD6OkJzNp7wYefSNmmf9c+tvy9z9 yVjg== X-Gm-Message-State: AOAM532KaSBrVTGoVOWJdGus1rWTikOUT0i3sVAme1DaZUTEGVpjRLd5 3Vp1HbmTmNpq7aJfDeQODLIFV5+fgvA= X-Google-Smtp-Source: ABdhPJyMwWQXQLxIsZRC2NwSLfaCQTejNsOu0zZjjUJntWylt0uyFP9Q4Xxpog5c+Qi2S04v5nxRPg== X-Received: by 2002:a7b:ce16:: with SMTP id m22mr26607300wmc.65.1615813305407; Mon, 15 Mar 2021 06:01:45 -0700 (PDT) Received: from localhost.localdomain ([193.48.40.110]) by smtp.gmail.com with ESMTPSA id f16sm18344646wrt.21.2021.03.15.06.01.44 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Mon, 15 Mar 2021 06:01:44 -0700 (PDT) From: zimoun Date: Mon, 15 Mar 2021 14:01:26 +0100 Message-Id: <20210315130134.30302-1-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.30.1 MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioinformatics.scm (r-grohmm): Move from here... * gnu/packages/bioconductor.scm (r-grohmm): ...to here. --- gnu/packages/bioconductor.scm | 27 +++++++++++++++++++++++++++ gnu/packages/bioinformatics.scm | 27 --------------------------- 2 files changed, 27 insertions(+), 27 deletions(-) base-commit: 1ed435bf394eee1a6cd9c354efb405920c212f0e diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 4f8e0562b1..55f718d5ab 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -8511,6 +8511,33 @@ and manages a local cache of files retrieved enabling quick and reproducible access.") (license license:artistic2.0))) +(define-public r-grohmm + (package + (name "r-grohmm") + (version "1.24.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "groHMM" version)) + (sha256 + (base32 + "08pap9wsaxl4jjlc1py0rc019gmi6daa0f9cr3ih1d97wybncanx")))) + (properties `((upstream-name . "groHMM"))) + (build-system r-build-system) + (propagated-inputs + `(("r-genomeinfodb" ,r-genomeinfodb) + ("r-genomicalignments" ,r-genomicalignments) + ("r-genomicranges" ,r-genomicranges) + ("r-iranges" ,r-iranges) + ("r-mass" ,r-mass) + ("r-rtracklayer" ,r-rtracklayer) + ("r-s4vectors" ,r-s4vectors))) + (home-page "https://github.com/Kraus-Lab/groHMM") + (synopsis "GRO-seq analysis pipeline") + (description + "This package provides a pipeline for the analysis of GRO-seq data.") + (license license:gpl3+))) + (define-public r-multiassayexperiment (package (name "r-multiassayexperiment") diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index b0736d32e4..20a9385604 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -7387,33 +7387,6 @@ includes software to ") (license license:cc0)))) -(define-public r-grohmm - (package - (name "r-grohmm") - (version "1.24.0") - (source - (origin - (method url-fetch) - (uri (bioconductor-uri "groHMM" version)) - (sha256 - (base32 - "08pap9wsaxl4jjlc1py0rc019gmi6daa0f9cr3ih1d97wybncanx")))) - (properties `((upstream-name . "groHMM"))) - (build-system r-build-system) - (propagated-inputs - `(("r-genomeinfodb" ,r-genomeinfodb) - ("r-genomicalignments" ,r-genomicalignments) - ("r-genomicranges" ,r-genomicranges) - ("r-iranges" ,r-iranges) - ("r-mass" ,r-mass) - ("r-rtracklayer" ,r-rtracklayer) - ("r-s4vectors" ,r-s4vectors))) - (home-page "https://github.com/Kraus-Lab/groHMM") - (synopsis "GRO-seq analysis pipeline") - (description - "This package provides a pipeline for the analysis of GRO-seq data.") - (license license:gpl3+))) - (define-public vsearch (package (name "vsearch")