From patchwork Mon Mar 8 17:58:01 2021 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Simon Tournier X-Patchwork-Id: 27546 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 7F33F27BC50; Mon, 8 Mar 2021 18:54:38 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.2 (2018-09-13) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.8 required=5.0 tests=BAYES_00,DKIM_ADSP_CUSTOM_MED, DKIM_SIGNED,FREEMAIL_FROM,MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H3, RCVD_IN_MSPIKE_WL,SPF_HELO_PASS,T_DKIM_INVALID,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.2 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 1305427BC55 for ; Mon, 8 Mar 2021 18:54:35 +0000 (GMT) Received: from localhost ([::1]:46920 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1lJL1W-0001TH-8a for patchwork@mira.cbaines.net; Mon, 08 Mar 2021 13:54:34 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]:59074) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1lJK9r-0003qR-Q7 for guix-patches@gnu.org; Mon, 08 Mar 2021 12:59:08 -0500 Received: from debbugs.gnu.org ([209.51.188.43]:33238) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1lJK9o-0001KO-Q6 for guix-patches@gnu.org; Mon, 08 Mar 2021 12:59:07 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1lJK9o-0002i5-Pb for guix-patches@gnu.org; Mon, 08 Mar 2021 12:59:04 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#47010] [PATCH 08/10] gnu: r-gostats: Move to (gnu packages bioconductor). Resent-From: zimoun Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 08 Mar 2021 17:59:04 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 47010 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 47010@debbugs.gnu.org Cc: zimoun Received: via spool by 47010-submit@debbugs.gnu.org id=B47010.161522630910297 (code B ref 47010); Mon, 08 Mar 2021 17:59:04 +0000 Received: (at 47010) by debbugs.gnu.org; 8 Mar 2021 17:58:29 +0000 Received: from localhost ([127.0.0.1]:44771 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lJK9F-0002fv-Db for submit@debbugs.gnu.org; Mon, 08 Mar 2021 12:58:29 -0500 Received: from mail-wr1-f41.google.com ([209.85.221.41]:38485) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lJK9B-0002eJ-EH for 47010@debbugs.gnu.org; Mon, 08 Mar 2021 12:58:25 -0500 Received: by mail-wr1-f41.google.com with SMTP id d15so12427931wrv.5 for <47010@debbugs.gnu.org>; Mon, 08 Mar 2021 09:58:25 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=Vz7z94cH8deYOCBCGw+8DMufxLXy126NaQu9IWedgZg=; b=NgBdeUBnGPWsjQhtapeoNxWp3IJdChWsuLryNB/7iznXb1XlX4pxRxSnGmG3ocVZHc +1kboFUshbxUOqcGQx/LpYGClVFeieXNe8DD4mHO/urcnnUP5BM3eQh1pxDS1xrqV6TD ZtwO/xAGeoLQeNR0fjI4482HBrhZXyvqrdocXiqOoMwrICBRUm9FkhvRQucGfnRTHRwI EWPBZ/eyYmGy0h7wJO27F4EYpJRzWuRRdSRbovKfbeO6Hem+7hiNczit+KmKCkE4SDof gqvucWcEUDIQxyQy7ebfsOE4qSotsAzzdgJH62U89TBJEZyBJGoEVIwx49hDBH7db+Zk yRTQ== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=Vz7z94cH8deYOCBCGw+8DMufxLXy126NaQu9IWedgZg=; b=fynRfNlvHDPTmvfk2/ys9Wvb/N4bTLC2b4uEno5QDxSOD6SDTIKTWQVsAo+2JX3jCg j/A8PO7A186eAE2ykNSsqE3bqlILKj917vChOrFQ/xZjnvZwR9oUf8oW536UjeK++DSx oR++0S1IPCCEMEOqdJ9EUY0d/Yi84peSxn9RqmDNPs3rUhhI6rqvTGcVv0whdTMzcUAd YG8x535uc9IVZU+u6ATE51zld20hYKnr71S2ZQvYe4z46A2LClEt4PQw/YX8dqUp5zWu Myj0ZfFug63iRqEWwBveJBOcOHW4v++m910CUFkPjpF00j8E4H2yg122KT4cG74MrtqC 6sSA== X-Gm-Message-State: AOAM5336c59LRM2v5BU49a0cguPTv6RikhaKiTbm+QntP354wLGTeWgr gRPJQQeiGzv2g8GkIhu6WzoBsL1Awok= X-Google-Smtp-Source: ABdhPJy4JyB9MBMNdi2hfVBkMNMEnyahnZqpaodX4uh0IeaT50b/Mn6gZW5VPXLb10tF5od5YodmBg== X-Received: by 2002:adf:f3cc:: with SMTP id g12mr24767969wrp.118.1615226299788; Mon, 08 Mar 2021 09:58:19 -0800 (PST) Received: from localhost.localdomain ([193.48.40.110]) by smtp.gmail.com with ESMTPSA id 75sm96993wma.23.2021.03.08.09.58.19 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Mon, 08 Mar 2021 09:58:19 -0800 (PST) From: zimoun Date: Mon, 8 Mar 2021 18:58:01 +0100 Message-Id: <20210308175802.62517-8-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.30.1 In-Reply-To: <20210308175802.62517-1-zimon.toutoune@gmail.com> References: <20210308175802.62517-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioinformatics.scm (r-gostats): Move from here... * gnu/packages/bioconductor.scm (r-gostats): ...to here. --- gnu/packages/bioconductor.scm | 31 +++++++++++++++++++++++++++++++ gnu/packages/bioinformatics.scm | 31 ------------------------------- 2 files changed, 31 insertions(+), 31 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 4e3dd25d61..4f4088db27 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1661,6 +1661,37 @@ exploration of the results.") high-throughput sequencing experiments.") (license license:artistic2.0))) +(define-public r-gostats + (package + (name "r-gostats") + (version "2.56.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "GOstats" version)) + (sha256 + (base32 + "18q8p0fv9fl2r6zjxknfjwqxr69dlyxy6c8amzn6c6dwjq1cxk6j")))) + (properties `((upstream-name . "GOstats"))) + (build-system r-build-system) + (propagated-inputs + `(("r-annotate" ,r-annotate) + ("r-annotationdbi" ,r-annotationdbi) + ("r-annotationforge" ,r-annotationforge) + ("r-biobase" ,r-biobase) + ("r-category" ,r-category) + ("r-go-db" ,r-go-db) + ("r-graph" ,r-graph) + ("r-rgraphviz" ,r-rgraphviz) + ("r-rbgl" ,r-rbgl))) + (home-page "https://bioconductor.org/packages/GOstats") + (synopsis "Tools for manipulating GO and microarrays") + (description + "This package provides a set of tools for interacting with GO and +microarray data. A variety of basic manipulation tools for graphs, hypothesis +testing and other simple calculations.") + (license license:artistic2.0))) + (define-public r-gseabase (package (name "r-gseabase") diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 6b32f3416c..186b051865 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -7385,37 +7385,6 @@ includes software to ") (license license:cc0)))) -(define-public r-gostats - (package - (name "r-gostats") - (version "2.56.0") - (source - (origin - (method url-fetch) - (uri (bioconductor-uri "GOstats" version)) - (sha256 - (base32 - "18q8p0fv9fl2r6zjxknfjwqxr69dlyxy6c8amzn6c6dwjq1cxk6j")))) - (properties `((upstream-name . "GOstats"))) - (build-system r-build-system) - (propagated-inputs - `(("r-annotate" ,r-annotate) - ("r-annotationdbi" ,r-annotationdbi) - ("r-annotationforge" ,r-annotationforge) - ("r-biobase" ,r-biobase) - ("r-category" ,r-category) - ("r-go-db" ,r-go-db) - ("r-graph" ,r-graph) - ("r-rgraphviz" ,r-rgraphviz) - ("r-rbgl" ,r-rbgl))) - (home-page "https://bioconductor.org/packages/GOstats") - (synopsis "Tools for manipulating GO and microarrays") - (description - "This package provides a set of tools for interacting with GO and -microarray data. A variety of basic manipulation tools for graphs, hypothesis -testing and other simple calculations.") - (license license:artistic2.0))) - (define-public r-shortread (package (name "r-shortread")