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Resent-From: zimoun Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 08 Mar 2021 17:59:03 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 47010 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 47010@debbugs.gnu.org Cc: zimoun Received: via spool by 47010-submit@debbugs.gnu.org id=B47010.161522630910283 (code B ref 47010); Mon, 08 Mar 2021 17:59:03 +0000 Received: (at 47010) by debbugs.gnu.org; 8 Mar 2021 17:58:29 +0000 Received: from localhost ([127.0.0.1]:44767 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lJK9E-0002fg-Mq for submit@debbugs.gnu.org; Mon, 08 Mar 2021 12:58:29 -0500 Received: from mail-wr1-f50.google.com ([209.85.221.50]:41746) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lJK9A-0002eF-DL for 47010@debbugs.gnu.org; Mon, 08 Mar 2021 12:58:25 -0500 Received: by mail-wr1-f50.google.com with SMTP id f12so12400329wrx.8 for <47010@debbugs.gnu.org>; Mon, 08 Mar 2021 09:58:24 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=bjwocVYIJU7VQ13OY1ZxpOU2foAZsN4OKaBYsrlY1jw=; b=sI1Q8k7SVuCgwKhr56bnOGCNyYcM6HkksQftPYVoF1TftPbmicPgU3lEg8g57G9/iZ iAbKMUWtrBmDu+xPf6Ubbj2rQXjiDalm8F9UWEPUotgWrYc6bBhCkpaRKh+V6cCloeDY WjYdVVIVzVWm4CqR2g4D5QPIruoaQ9Wn35kRphyETgO60gwf+r4bFmZXE+j+huiDinTm CJDvIN9jgPKGW6xGK+UFejn/0FOl+gyP/ajsZKJjig4BoRRf7oVinE1FAN1Cij/4l+ST oEVJn0XGU9EHeJTLRN7uzUYH10QtWPDSPdXVLYtatTq7BLrFgdPD8Zu2dB0lzbwAq/8e fZUg== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=bjwocVYIJU7VQ13OY1ZxpOU2foAZsN4OKaBYsrlY1jw=; b=EI0SajFY1wqrDzE1Feax2Zp4I+PqBOmPHolLgp3RRyt8KIiptXhY7UEIVyQ1FSUHp2 EbWG2hRBQKSJzcKLouPL3JBpryVdLkq0tKKSIqXT+2ndvk6RrRzc1co6B8FQC6pWN+qR rca0TPJRr6z0byLk2dUokcJFX9lmOW2gkYSrk5doKqm2nnlPnz6WSltj+sqRkfgQbLNi VWGHcyJWuKiAi3xX2ibZeY83Ny3Aay7FPlowmNHMV6TMSdNz+Ekt9MaPOLE299rWi0Pi oVsTAyLK1cOzbLmP3pghWr6SjIEAX3K17cNafxuXLD5/B2R7vI07t+rvDmi+WYGR70SF k6UA== X-Gm-Message-State: AOAM530LTFuT/zmASYJ4OUvL6ev5LGR1yXzH5g0KLMQwJN+VMvibmbQU WA0JVQxa6oodJl2J7+VZla0TSxc6sAQ= X-Google-Smtp-Source: ABdhPJzJ0CGaJU3poSY1B3RLehFqqzv0fdV5T9MH+/K55rYnSyLVwOovmSbUtVg33CflThdjYV6hLQ== X-Received: by 2002:adf:b30f:: with SMTP id j15mr24092143wrd.132.1615226298814; Mon, 08 Mar 2021 09:58:18 -0800 (PST) Received: from localhost.localdomain ([193.48.40.110]) by smtp.gmail.com with ESMTPSA id 75sm96993wma.23.2021.03.08.09.58.18 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Mon, 08 Mar 2021 09:58:18 -0800 (PST) From: zimoun Date: Mon, 8 Mar 2021 18:57:59 +0100 Message-Id: <20210308175802.62517-6-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.30.1 In-Reply-To: <20210308175802.62517-1-zimon.toutoune@gmail.com> References: <20210308175802.62517-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioinformatics.scm (r-gseabase): Move from here... * gnu/packages/bioconductor.scm (r-gseabase): ...to here. --- gnu/packages/bioconductor.scm | 29 +++++++++++++++++++++++++++++ gnu/packages/bioinformatics.scm | 29 ----------------------------- 2 files changed, 29 insertions(+), 29 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 0a9dc4f9ba..a17c6beeef 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1630,6 +1630,35 @@ exploration of the results.") high-throughput sequencing experiments.") (license license:artistic2.0))) +(define-public r-gseabase + (package + (name "r-gseabase") + (version "1.52.1") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "GSEABase" version)) + (sha256 + (base32 + "0dawh1kjmf6921jm77j2s2phrq5237pjc4sdh8fkln89gf48zx6i")))) + (properties `((upstream-name . "GSEABase"))) + (build-system r-build-system) + (propagated-inputs + `(("r-annotate" ,r-annotate) + ("r-annotationdbi" ,r-annotationdbi) + ("r-biobase" ,r-biobase) + ("r-biocgenerics" ,r-biocgenerics) + ("r-graph" ,r-graph) + ("r-xml" ,r-xml))) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page "https://bioconductor.org/packages/GSEABase") + (synopsis "Gene set enrichment data structures and methods") + (description + "This package provides classes and methods to support @dfn{Gene Set +Enrichment Analysis} (GSEA).") + (license license:artistic2.0))) + (define-public r-hpar (package (name "r-hpar") diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 0f96ffc02e..23b8ce6892 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -7385,35 +7385,6 @@ includes software to ") (license license:cc0)))) -(define-public r-gseabase - (package - (name "r-gseabase") - (version "1.52.1") - (source - (origin - (method url-fetch) - (uri (bioconductor-uri "GSEABase" version)) - (sha256 - (base32 - "0dawh1kjmf6921jm77j2s2phrq5237pjc4sdh8fkln89gf48zx6i")))) - (properties `((upstream-name . "GSEABase"))) - (build-system r-build-system) - (propagated-inputs - `(("r-annotate" ,r-annotate) - ("r-annotationdbi" ,r-annotationdbi) - ("r-biobase" ,r-biobase) - ("r-biocgenerics" ,r-biocgenerics) - ("r-graph" ,r-graph) - ("r-xml" ,r-xml))) - (native-inputs - `(("r-knitr" ,r-knitr))) - (home-page "https://bioconductor.org/packages/GSEABase") - (synopsis "Gene set enrichment data structures and methods") - (description - "This package provides classes and methods to support @dfn{Gene Set -Enrichment Analysis} (GSEA).") - (license license:artistic2.0))) - (define-public r-category (package (name "r-category")