From patchwork Mon Mar 8 17:57:58 2021 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Simon Tournier X-Patchwork-Id: 27539 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id C04A127BC51; Mon, 8 Mar 2021 18:21:39 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.2 (2018-09-13) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.8 required=5.0 tests=BAYES_00,DKIM_ADSP_CUSTOM_MED, DKIM_SIGNED,FREEMAIL_FROM,MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H3, RCVD_IN_MSPIKE_WL,SPF_HELO_PASS,T_DKIM_INVALID,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.2 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 0508727BC50 for ; Mon, 8 Mar 2021 18:21:39 +0000 (GMT) Received: from localhost ([::1]:56898 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1lJKVe-0003Ia-5F for patchwork@mira.cbaines.net; Mon, 08 Mar 2021 13:21:38 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]:59060) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1lJK9r-0003qK-Pl for guix-patches@gnu.org; Mon, 08 Mar 2021 12:59:08 -0500 Received: from debbugs.gnu.org ([209.51.188.43]:33235) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1lJK9n-0001Jm-Jl for guix-patches@gnu.org; Mon, 08 Mar 2021 12:59:07 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1lJK9n-0002hj-J1 for guix-patches@gnu.org; Mon, 08 Mar 2021 12:59:03 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#47010] [PATCH 05/10] gnu: r-rbgl: Move to (gnu packages bioconductor). Resent-From: zimoun Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 08 Mar 2021 17:59:03 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 47010 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 47010@debbugs.gnu.org Cc: zimoun Received: via spool by 47010-submit@debbugs.gnu.org id=B47010.161522630810275 (code B ref 47010); Mon, 08 Mar 2021 17:59:03 +0000 Received: (at 47010) by debbugs.gnu.org; 8 Mar 2021 17:58:28 +0000 Received: from localhost ([127.0.0.1]:44765 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lJK9E-0002fZ-6J for submit@debbugs.gnu.org; Mon, 08 Mar 2021 12:58:28 -0500 Received: from mail-wm1-f46.google.com ([209.85.128.46]:51148) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lJK9A-0002eD-0a for 47010@debbugs.gnu.org; Mon, 08 Mar 2021 12:58:24 -0500 Received: by mail-wm1-f46.google.com with SMTP id i9so59340wml.0 for <47010@debbugs.gnu.org>; Mon, 08 Mar 2021 09:58:23 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=rdg9WK2Aym8EEXPRrk6vNMips/BhH3sHqhVjjCO+f5M=; b=JHbYK/wMth1ImuluhnViE9/JiZUn+c26MZokdfpc7tBHCQXiRAb3ddSR2JEuPH6T0v tEMwtMJNDJzkL2K9Kewov0FxfCJ+bqSvygd4MeO6FY9XhAI7ACR4SonPQgsjFsaniyG9 SDiHTS2AZ68FRwwaNc9F0tRPguGOwqkU0AioIkFDgKIV71EtEvaADWe14Q+pCHk6VU+w snXmE1xs28QLSRJQf1LAcENyl4pEWViVe8OMcVlCie3KnBktdrWAilRBrJWvH9mM4cNV KJuBsgwMb4LGSO1dRUyIJveEQXvTjArtGWT32NzazFiXNR4RKlzaEavMXEBLbu4eXj7a j6FA== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=rdg9WK2Aym8EEXPRrk6vNMips/BhH3sHqhVjjCO+f5M=; b=nQmZwDQZCK0ZMTNwfwnh5kp4//+CzTVOGOzotoWuhgUU3QOqXwTeSWD2qhJOpwU5JD oNUWQv4VKbPt/ket8bZ2mTQ5NgjzYp8sa/K3eDYTcLQRJEovqBiBWnMN2IoBFZCyKAuc aYGF2hr3AiPwfDc8/C1KguNkkuGN/+DkvXNQ2qJ+Z4xrQhZ5H9KM7jEUYiKy3yWfWc/z UsshBajx8+yD9naZwe3fBwPazDGlloEGOLh6vcoWXMd1Ie14+DAKHDC2fdnSFlRBcLm5 FxTYA+oXQSkSA9vxKMwwyZhcxxykcFPc7yWpk4ZNulWOawhu6Nv9F00D7jpUNDmVyySs IKMQ== X-Gm-Message-State: AOAM5311UHFuvm1gjBTZwu4KoFZbhSZcCxGa6WK/2CYmWnsNonPqCG1t NKokHsI9w3/k/iJPvT56uYGABnbPOxQ= X-Google-Smtp-Source: ABdhPJx+PK/zCm72hfiTkKM5DEps9EdFApR30iu44SQ9pveFmoBu9z08jS7NRrhNYg8PGqiG/cn6LA== X-Received: by 2002:a7b:c442:: with SMTP id l2mr23369681wmi.69.1615226298374; Mon, 08 Mar 2021 09:58:18 -0800 (PST) Received: from localhost.localdomain ([193.48.40.110]) by smtp.gmail.com with ESMTPSA id 75sm96993wma.23.2021.03.08.09.58.17 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Mon, 08 Mar 2021 09:58:18 -0800 (PST) From: zimoun Date: Mon, 8 Mar 2021 18:57:58 +0100 Message-Id: <20210308175802.62517-5-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.30.1 In-Reply-To: <20210308175802.62517-1-zimon.toutoune@gmail.com> References: <20210308175802.62517-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioinformatics.scm (r-rbgl): Move from here... * gnu/packages/bioconductor.scm (r-rbgl): ...to here. --- gnu/packages/bioconductor.scm | 23 +++++++++++++++++++++++ gnu/packages/bioinformatics.scm | 23 ----------------------- 2 files changed, 23 insertions(+), 23 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 706b87b207..0a9dc4f9ba 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1650,6 +1650,29 @@ high-throughput sequencing experiments.") the Human Protein Atlas project.") (license license:artistic2.0))) +(define-public r-rbgl + (package + (name "r-rbgl") + (version "1.66.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "RBGL" version)) + (sha256 + (base32 + "016vyzgixb3gjpzi21rbs6ngnnqcxr77krwjjf1ldnzzj8vqrqsz")))) + (properties `((upstream-name . "RBGL"))) + (build-system r-build-system) + (propagated-inputs + `(("r-bh" ,r-bh) + ("r-graph" ,r-graph))) + (home-page "https://www.bioconductor.org/packages/RBGL") + (synopsis "Interface to the Boost graph library") + (description + "This package provides a fairly extensive and comprehensive interface to +the graph algorithms contained in the Boost library.") + (license license:artistic2.0))) + (define-public r-regioner (package (name "r-regioner") diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 3212641af9..0f96ffc02e 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -7385,29 +7385,6 @@ includes software to ") (license license:cc0)))) -(define-public r-rbgl - (package - (name "r-rbgl") - (version "1.66.0") - (source - (origin - (method url-fetch) - (uri (bioconductor-uri "RBGL" version)) - (sha256 - (base32 - "016vyzgixb3gjpzi21rbs6ngnnqcxr77krwjjf1ldnzzj8vqrqsz")))) - (properties `((upstream-name . "RBGL"))) - (build-system r-build-system) - (propagated-inputs - `(("r-bh" ,r-bh) - ("r-graph" ,r-graph))) - (home-page "https://www.bioconductor.org/packages/RBGL") - (synopsis "Interface to the Boost graph library") - (description - "This package provides a fairly extensive and comprehensive interface to -the graph algorithms contained in the Boost library.") - (license license:artistic2.0))) - (define-public r-gseabase (package (name "r-gseabase")