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Resent-From: zimoun Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 08 Mar 2021 17:59:03 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 47010 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 47010@debbugs.gnu.org Cc: zimoun Received: via spool by 47010-submit@debbugs.gnu.org id=B47010.161522630810268 (code B ref 47010); Mon, 08 Mar 2021 17:59:03 +0000 Received: (at 47010) by debbugs.gnu.org; 8 Mar 2021 17:58:28 +0000 Received: from localhost ([127.0.0.1]:44763 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lJK9D-0002fS-Sv for submit@debbugs.gnu.org; Mon, 08 Mar 2021 12:58:28 -0500 Received: from mail-wm1-f51.google.com ([209.85.128.51]:33631) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lJK99-0002e9-Ej for 47010@debbugs.gnu.org; Mon, 08 Mar 2021 12:58:23 -0500 Received: by mail-wm1-f51.google.com with SMTP id w203-20020a1c49d40000b029010c706d0642so8321141wma.0 for <47010@debbugs.gnu.org>; Mon, 08 Mar 2021 09:58:23 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=73OHF4VPjLBZkXsiPHnFAtNkykDl2Hr/CSobNnb6lhY=; b=jIZMow0Uq72in5DMSVImNytYGsb7dI1GHyrnxMA82L2kp9MnzwLFVaSv6zCoa4JDQn okq/hY4XA/CmmnjftyxLb1sd+GyIcKOEf8urh4BqR5757+kyBR4v1PUG1GJFgvW20tZo Y3kecEirgx6P8q6losJa4dhj1pPSKiGVibv5lPLA3G6sHpNEhrOKSLGWzeL33Y5h0r5J PstltCt2cxj3A7k/Izq623L/D+UCYiZYTrt7OBiesjbfZaNaAvepLtrV/7P2ou6QYuGc cs7Kp5pABJWiTJZSUc8NKwqB4FIWdFzORK67JYaOTKGkjbqVdmoJxSdxcvI5FgzdO0OS Un6w== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=73OHF4VPjLBZkXsiPHnFAtNkykDl2Hr/CSobNnb6lhY=; b=Xv2TM3VjoBGHdQpSzBuCW+8fko4eU5uK1Uhs5AwRkCYAtQV+xfRuNtC6xI2njvz1mj /5Xhxc3oBeDmIi0zLQz6irL5JPIoqT5LbxQQDCLo2qVKpyPvrdcfBhHkCmYsMsR88VXK 01E2AgMT0S2ieaJGtopcXA5pZF6uimdGiqeZrVdEQSgrEvItlFxi03U4/UDH6tUyvExi yYc+0hurLCpnU2PqIaDQXQ7DXTv7M7eZKJJuj5RwMU1B59X5GHLVnfRe2a+IVKOkaJ6g 9hmgSI6Ts7V4u/lnEftP0GLSbDrapmKrIl57JKO7HHr8/hW2spmn4Xl7DjV7Wu5ce4q3 wmIg== X-Gm-Message-State: AOAM532O10xkluKPcDJcRWpio5X1b21+ByRKhxNxasND5UtoTBcaW0ES xqy/VByZL7NNnjqPK5+oa7NyoD8cxnU= X-Google-Smtp-Source: ABdhPJzODC8nRi1qADrzZL4hech027Y7Zov4QJPhtBmjQgIsRVGlUZ2mZ2udGO0bBq1+OUgUyR0Aew== X-Received: by 2002:a7b:cb99:: with SMTP id m25mr31684wmi.64.1615226297906; Mon, 08 Mar 2021 09:58:17 -0800 (PST) Received: from localhost.localdomain ([193.48.40.110]) by smtp.gmail.com with ESMTPSA id 75sm96993wma.23.2021.03.08.09.58.17 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Mon, 08 Mar 2021 09:58:17 -0800 (PST) From: zimoun Date: Mon, 8 Mar 2021 18:57:57 +0100 Message-Id: <20210308175802.62517-4-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.30.1 In-Reply-To: <20210308175802.62517-1-zimon.toutoune@gmail.com> References: <20210308175802.62517-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioinformatics.scm (r-annotationforge): Move from here... * gnu/packages/bioconductor.scm (r-annotationforge): ...to here. --- gnu/packages/bioconductor.scm | 32 ++++++++++++++++++++++++++++++++ gnu/packages/bioinformatics.scm | 32 -------------------------------- 2 files changed, 32 insertions(+), 32 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 883b6df2fb..706b87b207 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1487,6 +1487,38 @@ structure.") microarrays.") (license license:artistic2.0))) +(define-public r-annotationforge + (package + (name "r-annotationforge") + (version "1.32.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "AnnotationForge" version)) + (sha256 + (base32 + "0y3820dkvwz09wlmz9drx6gqpsr9cwppaiz40zafwfxbz65y8px7")))) + (properties + `((upstream-name . "AnnotationForge"))) + (build-system r-build-system) + (propagated-inputs + `(("r-annotationdbi" ,r-annotationdbi) + ("r-biobase" ,r-biobase) + ("r-biocgenerics" ,r-biocgenerics) + ("r-dbi" ,r-dbi) + ("r-rcurl" ,r-rcurl) + ("r-rsqlite" ,r-rsqlite) + ("r-s4vectors" ,r-s4vectors) + ("r-xml" ,r-xml))) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page "https://bioconductor.org/packages/AnnotationForge") + (synopsis "Code for building annotation database packages") + (description + "This package provides code for generating Annotation packages and their +databases. Packages produced are intended to be used with AnnotationDbi.") + (license license:artistic2.0))) + (define-public r-deseq2 (package (name "r-deseq2") diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 4fa4a1e354..3212641af9 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -7385,38 +7385,6 @@ includes software to ") (license license:cc0)))) -(define-public r-annotationforge - (package - (name "r-annotationforge") - (version "1.32.0") - (source - (origin - (method url-fetch) - (uri (bioconductor-uri "AnnotationForge" version)) - (sha256 - (base32 - "0y3820dkvwz09wlmz9drx6gqpsr9cwppaiz40zafwfxbz65y8px7")))) - (properties - `((upstream-name . "AnnotationForge"))) - (build-system r-build-system) - (propagated-inputs - `(("r-annotationdbi" ,r-annotationdbi) - ("r-biobase" ,r-biobase) - ("r-biocgenerics" ,r-biocgenerics) - ("r-dbi" ,r-dbi) - ("r-rcurl" ,r-rcurl) - ("r-rsqlite" ,r-rsqlite) - ("r-s4vectors" ,r-s4vectors) - ("r-xml" ,r-xml))) - (native-inputs - `(("r-knitr" ,r-knitr))) - (home-page "https://bioconductor.org/packages/AnnotationForge") - (synopsis "Code for building annotation database packages") - (description - "This package provides code for generating Annotation packages and their -databases. Packages produced are intended to be used with AnnotationDbi.") - (license license:artistic2.0))) - (define-public r-rbgl (package (name "r-rbgl")