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References: <20210308175558.62461-1-zimon.toutoune@gmail.com> In-Reply-To: <20210308175558.62461-1-zimon.toutoune@gmail.com> Resent-From: zimoun Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 08 Mar 2021 17:59:01 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 47010 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 47010@debbugs.gnu.org Cc: zimoun Received: via spool by 47010-submit@debbugs.gnu.org id=B47010.161522630510224 (code B ref 47010); Mon, 08 Mar 2021 17:59:01 +0000 Received: (at 47010) by debbugs.gnu.org; 8 Mar 2021 17:58:25 +0000 Received: from localhost ([127.0.0.1]:44753 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lJK9A-0002ei-8A for submit@debbugs.gnu.org; Mon, 08 Mar 2021 12:58:24 -0500 Received: from mail-wm1-f51.google.com ([209.85.128.51]:38638) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lJK98-0002e2-ER for 47010@debbugs.gnu.org; Mon, 08 Mar 2021 12:58:22 -0500 Received: by mail-wm1-f51.google.com with SMTP id m20-20020a7bcb940000b029010cab7e5a9fso4342009wmi.3 for <47010@debbugs.gnu.org>; Mon, 08 Mar 2021 09:58:22 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=from:to:cc:subject:date:message-id:mime-version :content-transfer-encoding; bh=IJ4IOoDat0pEiMV2kWFZkQJ/yBhVCznWLMPXxWRpF2Y=; b=UVSQgMKVCdP3ddyuuO5U07ckFLecdM+dzBhYPAkDn/Htn5YxhsBDsyNrk/zEsVw4hl AkAzVb4lZLLqK2r7/5TIiJtkwZDI53o/rrCNCaCooPLOZuDMQntMo0EyZa/85FzTj4E+ fFPkt84Hv7V8klhCzLJH/3ECjnX5iO4CI9kPJPLsoYHdN0Rj4GVs2T5ZlXhtgjzb+W0h fdvdF2HXdqNpNLPPMIQLfJQu/URQdpUssvzKdDoFBGgILNNyrt5n0IoXnx70VYCFyIOG m51GNltScctPdWbKyEli304tdJ//pzYLNBa9usIjYI3Vh1wkhGu5CuD9NZ6/bhOPsnPP BgHg== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:mime-version :content-transfer-encoding; bh=IJ4IOoDat0pEiMV2kWFZkQJ/yBhVCznWLMPXxWRpF2Y=; b=lybe3XvBfS5cTkhTzgyjiDcum+gfaja0q9zsxgVbtsZ2ZB+mwa91UvWiyt9omqElGQ ofjSfdlfX8gt9/uRdDtmBSo9VgrdzNCdZJFXMH5m7mF5Gj1h7XS4+x20d/P61tVyAQBy wMsjRn8M7lyrohwRVl0erj26pRIo9vrshR6Y9THjCpaG/PRjwUFis3iVGcjGsZ43DsYt Zdus80PjzZ0k4JO0RR//PbYbcQjoePyDyTqmLewOE7gorGtTiXm1JpD+i5EesSoif9wH bM179l+hs2fQfh9LSzwWyQCDVHZZhpF1HwMNaz/Qrqf8lD2BPVr6pvWtGgNJKRRVInxT 2eLA== X-Gm-Message-State: AOAM530ffG9y7sU0qaXedQEgRkdz53UJINEa7X3SPKP6fAF7A5lTAcxt P9EZnYnQlDUSTIt2DpHoDTXr5nfwd7I= X-Google-Smtp-Source: ABdhPJz9AmJfI724UzipAbCrr4/D202qwxZa0VPdGsr93rffSRN7mhHmm7+XbxKn9nZ5bcwFLn/ZzA== X-Received: by 2002:a7b:cb99:: with SMTP id m25mr31611wmi.64.1615226296526; Mon, 08 Mar 2021 09:58:16 -0800 (PST) Received: from localhost.localdomain ([193.48.40.110]) by smtp.gmail.com with ESMTPSA id 75sm96993wma.23.2021.03.08.09.58.16 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Mon, 08 Mar 2021 09:58:16 -0800 (PST) From: zimoun Date: Mon, 8 Mar 2021 18:57:54 +0100 Message-Id: <20210308175802.62517-1-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.30.1 MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioinformatics.scm (r-genefilter): Move from here... * gnu/packages/bioconductor.scm (r-genefilter): ...to here. --- gnu/packages/bioconductor.scm | 28 ++++++++++++++++++++++++++++ gnu/packages/bioinformatics.scm | 28 ---------------------------- 2 files changed, 28 insertions(+), 28 deletions(-) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 89b191585b..e15984d0e3 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1487,6 +1487,34 @@ structure.") microarrays.") (license license:artistic2.0))) +(define-public r-genefilter + (package + (name "r-genefilter") + (version "1.72.1") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "genefilter" version)) + (sha256 + (base32 + "1c6h3qnjvphs977qhv5vafvsb108r0q7xhaayly6qv6adqfn94rn")))) + (build-system r-build-system) + (native-inputs + `(("gfortran" ,gfortran) + ("r-knitr" ,r-knitr))) + (propagated-inputs + `(("r-annotate" ,r-annotate) + ("r-annotationdbi" ,r-annotationdbi) + ("r-biobase" ,r-biobase) + ("r-biocgenerics" ,r-biocgenerics) + ("r-survival" ,r-survival))) + (home-page "https://bioconductor.org/packages/genefilter") + (synopsis "Filter genes from high-throughput experiments") + (description + "This package provides basic functions for filtering genes from +high-throughput sequencing experiments.") + (license license:artistic2.0))) + (define-public r-hpar (package (name "r-hpar") diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index be07bd18a3..258c3ca409 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -7385,34 +7385,6 @@ includes software to ") (license license:cc0)))) -(define-public r-genefilter - (package - (name "r-genefilter") - (version "1.72.1") - (source - (origin - (method url-fetch) - (uri (bioconductor-uri "genefilter" version)) - (sha256 - (base32 - "1c6h3qnjvphs977qhv5vafvsb108r0q7xhaayly6qv6adqfn94rn")))) - (build-system r-build-system) - (native-inputs - `(("gfortran" ,gfortran) - ("r-knitr" ,r-knitr))) - (propagated-inputs - `(("r-annotate" ,r-annotate) - ("r-annotationdbi" ,r-annotationdbi) - ("r-biobase" ,r-biobase) - ("r-biocgenerics" ,r-biocgenerics) - ("r-survival" ,r-survival))) - (home-page "https://bioconductor.org/packages/genefilter") - (synopsis "Filter genes from high-throughput experiments") - (description - "This package provides basic functions for filtering genes from -high-throughput sequencing experiments.") - (license license:artistic2.0))) - (define-public r-deseq2 (package (name "r-deseq2")