@@ -13652,6 +13652,51 @@ storage format, called @code{cool}, used to store genomic interaction data,
such as Hi-C contact matrices.")
(license license:bsd-3)))
+(define-public python-cooltools
+;;pypi sources requiere bioframe<0.1 while github latest version requires
+;; bioframe>=0.1.0
+ (let ((revision "1")
+ (commit "53ce4fc11d046e84ca36f3591e9e5d548de9f7b2"))
+ (package
+ (name "python-cooltools")
+ (version (git-version "0.3.2" revision commit))
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/open2c/cooltools")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "0y1wf7a0by2kih2iy5xrwzdgw1i24cwigfz4352aq5npxrpjvj6q"))))
+ (build-system python-build-system)
+ (propagated-inputs
+ `(("python-bioframe" ,python-bioframe)
+ ("python-click" ,python-click)
+ ("python-cooler" ,python-cooler)
+ ("python-cytoolz" ,python-cytoolz)
+ ("python-joblib" ,python-joblib)
+ ("python-matplotlib" ,python-matplotlib)
+ ("python-multiprocess" ,python-multiprocess)
+ ("python-numba" ,python-numba)
+ ("python-numpy" ,python-numpy)
+ ("python-pandas" ,python-pandas)
+ ("python-scikit-learn" ,python-scikit-learn)
+ ("python-scipy" ,python-scipy)
+ ("python-tables" ,python-tables)))
+ (native-inputs
+ `(("python-cython" ,python-cython)))
+ (home-page
+ "https://github.com/open2c/cooltools")
+ (synopsis
+ "Analysis tools for genomic interaction data stored in .cool format")
+ (description
+ "This package provides necessary tools for the analysis of the genomic
+interaction data stored in .cool format. This collection of tools includes
+operations like compartment, insulation or peak calling.")
+ (license license:expat))))
+
(define-public python-hicmatrix
(package
(name "python-hicmatrix")