From patchwork Tue Mar 2 05:44:40 2021 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Patchwork-Submitter: Tim Howes X-Patchwork-Id: 27408 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id D84F927BC4E; Tue, 2 Mar 2021 08:49:02 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.2 (2018-09-13) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.8 required=5.0 tests=BAYES_00,DKIM_SIGNED, MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H3,RCVD_IN_MSPIKE_WL,SPF_HELO_PASS, T_DKIM_INVALID,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.2 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 7E24627BC4F for ; Tue, 2 Mar 2021 08:49:02 +0000 (GMT) Received: from localhost ([::1]:51348 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1lH0iD-0002eT-MO for patchwork@mira.cbaines.net; Tue, 02 Mar 2021 03:49:01 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]:37610) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1lGxr8-0008NT-Ap for guix-patches@gnu.org; Tue, 02 Mar 2021 00:46:02 -0500 Received: from debbugs.gnu.org ([209.51.188.43]:39854) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1lGxr7-00047I-PZ for guix-patches@gnu.org; Tue, 02 Mar 2021 00:46:02 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1lGxr7-0004u8-Lb for guix-patches@gnu.org; Tue, 02 Mar 2021 00:46:01 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#46869] [PATCH] gnu: hmmer: Update to 3.3.2. Resent-From: Tim Howes Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Tue, 02 Mar 2021 05:46:01 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 46869 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 46869@debbugs.gnu.org X-Debbugs-Original-To: guix-patches@gnu.org Received: via spool by submit@debbugs.gnu.org id=B.161466390118778 (code B ref -1); Tue, 02 Mar 2021 05:46:01 +0000 Received: (at submit) by debbugs.gnu.org; 2 Mar 2021 05:45:01 +0000 Received: from localhost ([127.0.0.1]:51400 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lGxq5-0004sB-2J for submit@debbugs.gnu.org; Tue, 02 Mar 2021 00:45:01 -0500 Received: from lists.gnu.org ([209.51.188.17]:40266) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lGxq2-0004s3-Ou for submit@debbugs.gnu.org; Tue, 02 Mar 2021 00:44:55 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]:37456) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1lGxq2-0007mU-F4 for guix-patches@gnu.org; Tue, 02 Mar 2021 00:44:54 -0500 Received: from lavabit.com ([38.147.122.66]:9004) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1lGxq0-0003RZ-Ly for guix-patches@gnu.org; Tue, 02 Mar 2021 00:44:54 -0500 Received: from localhost.localdomain (158-51-81-84.pool.common.net [158.51.81.84]) by lavabit.com with ESMTP id G8Y2JH0VBUKQ for ; Mon, 01 Mar 2021 23:44:50 -0600 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=lavabit.com; s=bazinga; t=1614663890; bh=HzsakU82fFWMng9kCGaKYusCdcfXqhIYMO/7O8Y2F+M=; h=From:To:Subject:Date:Message-Id:X-Mailer:MIME-Version: Content-Type:Content-Transfer-Encoding; b=MKZYy7pFg+bZWl/jLESfNaUOBTCaPufG3NFSVBKlWQURmT+S4qHmOEk6dG37I7Z2B osKwwP2kqtETXwWAQzqvemfVJYerRwD6uKzXFS9eyJMzU/aOdg//uLD8J/uR4ATorB HmvnswrYlzOpYo3WUUCjit4ZJKHKRwoRJV5S3Qw14hQja5Si6/VNqEEXl0C3CzW/ru XyQ9GpON0jBjOsgXvoVmGvzPJ7MwB1mEvTAPN8KwJkucG3NktJjOBrScFISrXk5joH i2FCAiSTguUgBDJTZnrWMcGe8s7J6BXnqfHD8tl1R2t7iKmKMLdyQQdsU268pwWWgU 173W+z1iqnyyg== Date: Mon, 1 Mar 2021 21:44:40 -0800 Message-Id: <20210302054440.41523-1-timhowes@lavabit.com> X-Mailer: git-send-email 2.30.1 MIME-Version: 1.0 Received-SPF: pass client-ip=38.147.122.66; envelope-from=timhowes@lavabit.com; helo=lavabit.com X-Spam_score_int: -20 X-Spam_score: -2.1 X-Spam_bar: -- X-Spam_report: (-2.1 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-Mailman-Approved-At: Tue, 02 Mar 2021 03:48:55 -0500 X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" Reply-to: Tim Howes X-ACL-Warn: , Tim Howes via Guix-patches X-Patchwork-Original-From: Tim Howes via Guix-patches via From: Tim Howes X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioinformatics.scm (hmmer): Update to 3.3.2. --- gnu/packages/bioinformatics.scm | 8 +++++--- 1 file changed, 5 insertions(+), 3 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 42476a4b2f..48dfe0287e 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -19,6 +19,7 @@ ;;; Copyright © 2020 Jakub Kądziołka ;;; Copyright © 2020 Pierre Langlois ;;; Copyright © 2020 Bonface Munyoki Kilyungi +;;; Copyright © 2021 Tim Howes ;;; ;;; This file is part of GNU Guix. ;;; @@ -3874,7 +3875,7 @@ indexing scheme is called a @dfn{Hierarchical Graph FM index} (HGFM).") (define-public hmmer (package (name "hmmer") - (version "3.2.1") + (version "3.3.2") (source (origin (method url-fetch) @@ -3882,9 +3883,10 @@ indexing scheme is called a @dfn{Hierarchical Graph FM index} (HGFM).") "http://eddylab.org/software/hmmer/hmmer-" version ".tar.gz")) (sha256 (base32 - "171bivy6xhgjsz5nv53n81pc3frnwz29ylblawk2bv46szwjjqd5")))) + "0s9wf6n0qanbx8qs6igfl3vyjikwbrvh4d9d6mv54yp3xysykzlj")))) (build-system gnu-build-system) - (native-inputs `(("perl" ,perl))) + (native-inputs `(("perl" ,perl) + ("python" ,python))) ; for tests (home-page "http://hmmer.org/") (synopsis "Biosequence analysis using profile hidden Markov models") (description