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[bug#46448] gnu: bowtie1: Update to 1.3.0.

Message ID 20210211210329.20176-1-madalinionel.patrascu@mdc-berlin.de
State Accepted
Headers show
Series [bug#46448] gnu: bowtie1: Update to 1.3.0. | expand

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Commit Message

Mădălin Ionel Patrașcu Feb. 11, 2021, 9:03 p.m. UTC 
* gnu/packages/bioinformatics.scm (bowtie1): Update to 1.3.0.
---
 gnu/packages/bioinformatics.scm | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

Comments

Ricardo Wurmus Feb. 11, 2021, 9:39 p.m. UTC | #1 
Ricardo Wurmus <rekado@elephly.net> writes:

> Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> writes:
>
>> * gnu/packages/bioinformatics.scm (bowtie1): Update to 1.3.0.
>
> Pushed with commit 160e4a95e7 with a slightly changed commit message to
> mention the change to the “arguments” field.
>
> Thanks!
diff mbox series

Patch

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index cbf08c5dd2..ab149d6aad 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -1654,14 +1654,14 @@  gapped, local, and paired-end alignment modes.")
 (define-public bowtie1
   (package
     (name "bowtie1")
-    (version "1.2.3")
+    (version "1.3.0")
     (source (origin
               (method url-fetch)
               (uri (string-append "mirror://sourceforge/bowtie-bio/bowtie/"
-                                  version "/bowtie-src-x86_64.zip"))
+                                  version "/bowtie-" version "-src.zip"))
               (sha256
                (base32
-                "0vmiqdhc9dzyfy9sh6vgi7k9xy2hiw8g87vbamnc6cgpm179zsa4"))
+                "11dbihdnrizc6qhx9xsw77w3q5ssx642alaqzvhxx32ak9glvq04"))
               (modules '((guix build utils)))
               (snippet
                '(substitute* "Makefile"
@@ -1672,7 +1672,7 @@  gapped, local, and paired-end alignment modes.")
     (arguments
      '(#:tests? #f                      ; no "check" target
        #:make-flags
-       (list "all"
+       (list "CC=gcc" "all"
              (string-append "prefix=" (assoc-ref %outputs "out")))
        #:phases
        (modify-phases %standard-phases