| Message ID | 20201223180338.58588-1-zimon.toutoune@gmail.com |
|---|---|
| Headers | show |
Hi,
Janitor [1] patch set. It moves Bioconductor packages from (gnu packages
bioinformatics) to (gnu packages bioconductor). Far to be complete; still 7
pacth set like this one are coming...
1: <https://lists.gnu.org/archive/html/guix-commits/2020-09/msg00416.html>
To transfer the Copyright, I use:
git --no-pager log --date=format:"%Y" --format="%ad %an %s" --grep=r-<name>
Then, after the move, I run:
./pre-inst-env guix build r-<name> --no-grafts
./pre-inst-env guix build r-<name> --no-grafts --check
and at the end of the series, I run:
make as-derivation
to check that "guix pull" is not broken; just in case.
Last, I have not carefully checked the imported modules, so it could
be possible to perhaps remove couple of #:use-module (gnu packages <useless>)
in gnu/packages/bioinformatics.scm.
All the best,
simon
zimoun (10):
gnu: r-sushi: Move to (gnu packages bioconductor).
gnu: r-gwascat: Move to (gnu packages bioconductor).
gnu: r-gviz: Move to (gnu packages bioconductor).
gnu: r-gqtlstats: Move to (gnu packages bioconductor).
gnu: r-ldblock: Move to (gnu packages bioconductor).
gnu: r-erma: Move to (gnu packages bioconductor).
gnu: r-homo-sapiens: Move to (gnu packages bioconductor).
gnu: r-snpstats: Move to (gnu packages bioconductor).
gnu: r-gqtlstats: Move to (gnu packages bioconductor).
gnu: r-ggbio: Move to (gnu packages bioconductor).
gnu/packages/bioconductor.scm | 400 +++++++++++++++++++++++++++++++
gnu/packages/bioinformatics.scm | 405 --------------------------------
2 files changed, 400 insertions(+), 405 deletions(-)
base-commit: 4994e1f2bd9b573d2c13abf2b98ec204f510ad11
Hi Ricardo, On Tue, 29 Dec 2020 at 17:42, Ricardo Wurmus <rekado@elephly.net> wrote: >> Janitor [1] patch set. It moves Bioconductor packages from (gnu packages >> bioinformatics) to (gnu packages bioconductor). Far to be complete; still 7 >> pacth set like this one are coming... >> >> 1: <https://lists.gnu.org/archive/html/guix-commits/2020-09/msg00416.html> > > Excellent! > > Pushed with commit 610cd6a170. Thanks. Well, I should change my workflow since I have missed [2]. 2: <https://lists.gnu.org/archive/html/guix-devel/2020-12/msg00316.html> Cheers, simon
Hi, Janitor [1] patch set. It moves Bioconductor packages from (gnu packages bioinformatics) to (gnu packages bioconductor). Far to be complete; still 7 pacth set like this one are coming... 1: <https://lists.gnu.org/archive/html/guix-commits/2020-09/msg00416.html> To transfer the Copyright, I use: git --no-pager log --date=format:"%Y" --format="%ad %an %s" --grep=r-<name> Then, after the move, I run: ./pre-inst-env guix build r-<name> --no-grafts ./pre-inst-env guix build r-<name> --no-grafts --check and at the end of the series, I run: make as-derivation to check that "guix pull" is not broken; just in case. Last, I have not carefully checked the imported modules, so it could be possible to perhaps remove couple of #:use-module (gnu packages <useless>) in gnu/packages/bioinformatics.scm. All the best, simon zimoun (10): gnu: r-sushi: Move to (gnu packages bioconductor). gnu: r-gwascat: Move to (gnu packages bioconductor). gnu: r-gviz: Move to (gnu packages bioconductor). gnu: r-gqtlstats: Move to (gnu packages bioconductor). gnu: r-ldblock: Move to (gnu packages bioconductor). gnu: r-erma: Move to (gnu packages bioconductor). gnu: r-homo-sapiens: Move to (gnu packages bioconductor). gnu: r-snpstats: Move to (gnu packages bioconductor). gnu: r-gqtlstats: Move to (gnu packages bioconductor). gnu: r-ggbio: Move to (gnu packages bioconductor). gnu/packages/bioconductor.scm | 400 +++++++++++++++++++++++++++++++ gnu/packages/bioinformatics.scm | 405 -------------------------------- 2 files changed, 400 insertions(+), 405 deletions(-) base-commit: 4994e1f2bd9b573d2c13abf2b98ec204f510ad11