@@ -9213,3 +9213,37 @@ on KEGG pathways and GO terms for major research species, including human,
mouse, rat and budding yeast. Mapping data between common gene IDs for budding
yeast are also included.")
(license license:gpl2+)))
+
+(define-public r-pathview
+ (package
+ (name "r-pathview")
+ (version "1.30.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "pathview" version))
+ (sha256
+ (base32 "11fisiksw1y64ii9q8p2znyp9w8mlqzgiaacmycw59rngkjlmbs4"))))
+ (properties `((upstream-name . "pathview")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-annotationdbi" ,r-annotationdbi)
+ ("r-graph" ,r-graph)
+ ("r-kegggraph" ,r-kegggraph)
+ ("r-keggrest" ,r-keggrest)
+ ("r-org-hs-eg-db" ,r-org-hs-eg-db)
+ ("r-png" ,r-png)
+ ("r-rgraphviz" ,r-rgraphviz)
+ ("r-xml" ,r-xml)))
+ (home-page "https://pathview.uncc.edu/")
+ (synopsis "Tool set for pathway based data integration and visualization")
+ (description
+ "@code{r-pathview} is a tool set for pathway based data integration and
+visualization. It maps and renders a wide variety of biological data on
+relevant pathway graphs. All users need is to supply their data and specify
+the target pathway. This package automatically downloads the pathway graph
+data, parses the data file, maps user data to the pathway, and render pathway
+graph with the mapped data. In addition, @code{r-pathview} also seamlessly
+integrates with pathway and gene set (enrichment) analysis tools for
+large-scale and fully automated analysis.")
+ (license license:gpl3+)))