diff mbox series

[bug#40691,2/3] gnu: Add lmfit.

Message ID 20200502164325.2028-2-vincent.legoll@gmail.com
State Accepted
Headers show
Series [bug#40691,1/3] gnu: Add tng. | expand

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Commit Message

Vincent Legoll May 2, 2020, 4:43 p.m. UTC 
* gnu/packages/bioinformatics.scm (lmfit): New variable.
---
 gnu/packages/bioinformatics.scm | 24 ++++++++++++++++++++++++
 1 file changed, 24 insertions(+)

Comments

Ludovic Courtès May 3, 2020, 10:43 a.m. UTC | #1 
Vincent Legoll <vincent.legoll@gmail.com> skribis:

> * gnu/packages/bioinformatics.scm (lmfit): New variable.

[...]

> +    (home-page "https://jugit.fz-juelich.de/mlz/lmfit")
> +    (synopsis "C library for Levenberg-Marquardt minimization and least-squares
> +fitting")

Perhaps remove “C Library for” to make it more concise.

What about moving it to algebra.scm, next to Eigen & co.?

Otherwise LGTM!

Ludo’.
diff mbox series

Patch

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index f90401a560..1e3e145500 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -821,6 +821,30 @@  optionally velocities and the H-matrix.  Coordinates and velocities are
 stored with user-specified precision.")
     (license license:bsd-3)))
 
+(define-public lmfit
+  (package
+    (name "lmfit")
+    (version "8.2.2")
+    (source (origin
+              (method git-fetch)
+              (uri (git-reference
+                    (url "https://jugit.fz-juelich.de/mlz/lmfit.git")
+                    (commit (string-append "v" version))))
+              (file-name (git-file-name name version))
+              (sha256
+               (base32
+                "00bch77a6qgnw6vzsjn2a42n8n683ih3xm0wpr454jxa15hw78vf"))))
+    (build-system cmake-build-system)
+    (native-inputs
+     `(("perl" ,perl)))                   ; for pod2man
+    (home-page "https://jugit.fz-juelich.de/mlz/lmfit")
+    (synopsis "C library for Levenberg-Marquardt minimization and least-squares
+fitting")
+    (description "lmfit is a C library for Levenberg-Marquardt least-squares
+minimization and curve fitting.  It is mature code, based on decades-old
+algorithms from the FORTRAN library MINPACK.")
+    (license license:bsd-2)))
+
 (define-public python-pybedtools
   (package
     (name "python-pybedtools")