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[bug#39777,V3,04/11] gnu: python-jsonschema: Update to 3.2.0.

Message ID 20200309081827.13489-4-tanguy@bioneland.org
State Accepted
Headers show
Series [bug#39777,V3,01/11] gnu: python-pexpect: Update to 4.8.0. | expand

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Commit Message

Tanguy LE CARROUR March 9, 2020, 8:18 a.m. UTC
* gnu/packages/python-xyz.scm (python-jsonschema): Update to 3.2.0.
[propagated-inputs]: Add python-importlib-metadata.
[arguments]: Disable failing test.
---
 gnu/packages/python-xyz.scm | 10 ++++++++--
 1 file changed, 8 insertions(+), 2 deletions(-)

Comments

Leo Famulari March 11, 2020, 7:15 p.m. UTC | #1
On Mon, Mar 09, 2020 at 09:18:20AM +0100, Tanguy Le Carrour wrote:
> * gnu/packages/python-xyz.scm (python-jsonschema): Update to 3.2.0.
> [propagated-inputs]: Add python-importlib-metadata.
> [arguments]: Disable failing test.

> +         (add-before 'check 'disable-failing-test
> +           (lambda _
> +             (substitute* "jsonschema/tests/test_cli.py"
> +               (("def test_version") "def _test_version"))
> +             #t))

Again, we need a comment explaining what's wrong with the test.
Tanguy LE CARROUR March 12, 2020, 8:48 a.m. UTC | #2
Hi Leo,

Thanks for taking the time to read my patches!


Le 03/11, Leo Famulari a écrit :
> On Mon, Mar 09, 2020 at 09:18:20AM +0100, Tanguy Le Carrour wrote:
> > * gnu/packages/python-xyz.scm (python-jsonschema): Update to 3.2.0.
> > [propagated-inputs]: Add python-importlib-metadata.
> > [arguments]: Disable failing test.
> 
> > +         (add-before 'check 'disable-failing-test
> > +           (lambda _
> > +             (substitute* "jsonschema/tests/test_cli.py"
> > +               (("def test_version") "def _test_version"))
> > +             #t))
> 
> Again, we need a comment explaining what's wrong with the test.

My bad! Sorry!
I started investigating when I submitted the patch, but… well… I haven't
found a fix yet and I'm not sure who to blame!

The test relies on a call to `subprocess.check_output` to run
`python -m jsonschema --version`, but it behaves like `--version` was
never passed to the command?!

```
145     def test_version(self):
146         version = subprocess.check_output(
147             [sys.executable, "-m", "jsonschema", "--version"],
148             stderr=subprocess.STDOUT,
149         )
```

Replacing `check_output` with `check_call` shows the actual error message:

```
usage: __main__.py [-h] [-i INSTANCES] [-F ERROR_FORMAT] [-V VALIDATOR] schema
__main__.py: error: the following arguments are required: schema
```

Doesn't really look like a problem with jsonschema to me, and… I would not dare
blaming python. ^_^'

Any idea welcome!
Leo Famulari March 12, 2020, 5:44 p.m. UTC | #3
On Thu, Mar 12, 2020 at 09:48:28AM +0100, Tanguy Le Carrour wrote:
> The test relies on a call to `subprocess.check_output` to run
> `python -m jsonschema --version`, but it behaves like `--version` was
> never passed to the command?!

How do you know it behaves like that? Is there some error output?
Tanguy LE CARROUR March 13, 2020, 8:45 a.m. UTC | #4
Le 03/12, Leo Famulari a écrit :
> On Thu, Mar 12, 2020 at 09:48:28AM +0100, Tanguy Le Carrour wrote:
> > The test relies on a call to `subprocess.check_output` to run
> > `python -m jsonschema --version`, but it behaves like `--version` was
> > never passed to the command?!
> 
> How do you know it behaves like that? Is there some error output?

Actually, you're right, I don't know, because I didn't reproduce the exact same
error!

```
$ ./pre-inst-env guix build python-jsonschema -K
[…]
subprocess.CalledProcessError: Command '['/gnu/store/l8nphg0idd8pfddyad8f92lx8d1hc053-python-wrapper-3.7.4/bin/python', '-m', 'jsonschema', '--version']' returned non-zero exit status 1.
```

The exit status is 1.

To reproduce it in the build directory I did the following:

```
$ cd /tmp/guix-build-python-jsonschema-3.2.0.drv-0/jsonschema-3.2.0/
$ guix environment python-jsonschema --ad-hoc python-importlib-metadata
$ set -x PYTHONPATH .:$PYTHONPATH # I'm using Fish
$ trial jsonschema/tests/test_cli.py                                                                                                                                                                                              [env] GUIX
jsonschema.tests.test_cli
  TestCLI
    test_draft3_schema_draft4_validator ...                                [OK]
    test_successful_validation ...                                         [OK]
    test_unsuccessful_validation ...                                       [OK]
    test_unsuccessful_validation_multiple_instances ...                    [OK]
    test_version ...                                                    [ERROR]

===============================================================================
[ERROR]
Traceback (most recent call last):
[…]
subprocess.CalledProcessError: Command '['/gnu/store/m4kgg8z52kn6xspmd3brvivd129d4i3s-python-wrapper-3.7.4/bin/python', '-m', 'jsonschema', '--version']' returned non-zero exit status 2.
```

But the exit status was… 2! Which I didn't pay attention at first.

Then, I modified the code of the test to add some log:

```
$ trial jsonschema/tests/test_cli.py                                                                       [env] GUIX
jsonschema.tests.test_cli
  TestCLI
    test_draft3_schema_draft4_validator ...                                [OK]
    test_successful_validation ...                                         [OK]
    test_unsuccessful_validation ...                                       [OK]
    test_unsuccessful_validation_multiple_instances ...                    [OK]
    test_version ... usage: __main__.py [-h] [-i INSTANCES] [-F ERROR_FORMAT] [-V VALIDATOR] schema
__main__.py: error: the following arguments are required: schema
                                                   [ERROR]
```

This error message in the output is the one I would get by calling
`python -m jsonschema` without `--version`.

This was the end of my investigation and… a mistake! ^_^'

Right after your question, I tried to do the same but directly from my package
definition by adding a `substitute`:

```
(add-before 'check 'replace-check-output
  (lambda _
          (substitute* "jsonschema/tests/test_cli.py"
            (("check_output") "check_call"))
          #t))
```

Re-built the package and… got the exit status 1 with a different error message
in the log:

```
jsonschema.tests.test_cli
  TestCLI
    test_draft3_schema_draft4_validator ...                                [OK]
    test_successful_validation ...                                         [OK]
    test_unsuccessful_validation ...                                       [OK]
    test_unsuccessful_validation_multiple_instances ...                    [OK]
    test_version ... /gnu/store/l8nphg0idd8pfddyad8f92lx8d1hc053-python-wrapper-3.7.4/bin/python: No module named jsonschema
                                                   [ERROR]
===============================================================================
[ERROR]
Traceback (most recent call last):
[…]
subprocess.CalledProcessError: Command '['/gnu/store/l8nphg0idd8pfddyad8f92lx8d1hc053-python-wrapper-3.7.4/bin/python', '-m', 'jsonschema', '--version']' returned non-zero exit status 1.
```

So, I'm left with the same question:
 - why does it fail with `No module named jsonschema`? and with a second one
 - why wasn't I able to reproduce the error from the build directory?!

I still have a lot to learn! :-(
Any help welcome!
Leo Famulari March 14, 2020, 5:33 p.m. UTC | #5
On Fri, Mar 13, 2020 at 09:45:41AM +0100, Tanguy Le Carrour wrote:
> So, I'm left with the same question:
>  - why does it fail with `No module named jsonschema`? and with a second one

I'm not sure, I'm not that strong with Python.

>  - why wasn't I able to reproduce the error from the build directory?!

There are lots of things that could have changed.

First, I would use `guix environment --pure` to try isolating the rest
of the system, beginning to approximate the build chroot. You could even
try `guix environment --container` if your system supports it.

Second, the tests might be idempotent.

You'll have a hard time reproducing the build environment exactly but
it's usually possible to figure out why the test is failing.
Leo Famulari March 14, 2020, 5:36 p.m. UTC | #6
On Fri, Mar 13, 2020 at 09:45:41AM +0100, Tanguy Le Carrour wrote:
> Re-built the package and… got the exit status 1 with a different error message
> in the log:
> 
> ```
> jsonschema.tests.test_cli
>   TestCLI
>     test_draft3_schema_draft4_validator ...                                [OK]
>     test_successful_validation ...                                         [OK]
>     test_unsuccessful_validation ...                                       [OK]
>     test_unsuccessful_validation_multiple_instances ...                    [OK]
>     test_version ... /gnu/store/l8nphg0idd8pfddyad8f92lx8d1hc053-python-wrapper-3.7.4/bin/python: No module named jsonschema
>                                                    [ERROR]
> ===============================================================================

My understanding is that the test suite of jsonschema can't find
jsonschema. Is that correct? If so, you should look into the
add-installed-pythonpath procedure and some examples of how it's used.
Tanguy LE CARROUR March 14, 2020, 6:40 p.m. UTC | #7
Le 03/14, Leo Famulari a écrit :
> On Fri, Mar 13, 2020 at 09:45:41AM +0100, Tanguy Le Carrour wrote:
> > Re-built the package and… got the exit status 1 with a different error message
> > in the log:
> > 
> > ```
> > jsonschema.tests.test_cli
> >   TestCLI
> >     test_draft3_schema_draft4_validator ...                                [OK]
> >     test_successful_validation ...                                         [OK]
> >     test_unsuccessful_validation ...                                       [OK]
> >     test_unsuccessful_validation_multiple_instances ...                    [OK]
> >     test_version ... /gnu/store/l8nphg0idd8pfddyad8f92lx8d1hc053-python-wrapper-3.7.4/bin/python: No module named jsonschema
> >                                                    [ERROR]
> > ===============================================================================
> 
> My understanding is that the test suite of jsonschema can't find
> jsonschema. Is that correct? If so, you should look into the
> add-installed-pythonpath procedure and some examples of how it's used.

I'll do that! Thanks!
Tanguy LE CARROUR March 19, 2020, 7:42 a.m. UTC | #8
Hi Leo,

Le 03/14, Tanguy Le Carrour a écrit :
> Le 03/14, Leo Famulari a écrit :
> > On Fri, Mar 13, 2020 at 09:45:41AM +0100, Tanguy Le Carrour wrote:
> > > Re-built the package and… got the exit status 1 with a different error message
> > > in the log:
> > > 
> > > ```
> > > jsonschema.tests.test_cli
> > >   TestCLI
> > >     test_draft3_schema_draft4_validator ...                                [OK]
> > >     test_successful_validation ...                                         [OK]
> > >     test_unsuccessful_validation ...                                       [OK]
> > >     test_unsuccessful_validation_multiple_instances ...                    [OK]
> > >     test_version ... /gnu/store/l8nphg0idd8pfddyad8f92lx8d1hc053-python-wrapper-3.7.4/bin/python: No module named jsonschema
> > >                                                    [ERROR]
> > > ===============================================================================
> > 
> > My understanding is that the test suite of jsonschema can't find
> > jsonschema. Is that correct? If so, you should look into the
> > add-installed-pythonpath procedure and some examples of how it's used.
> 
> I'll do that! Thanks!

It solved the problem! Thanks! I'm moving to fixing the cachy/redis problem
now, and I'll submit a v4 patch set once it's done!

Regards
Leo Famulari March 20, 2020, 7:15 p.m. UTC | #9
On Thu, Mar 19, 2020 at 08:42:16AM +0100, Tanguy Le Carrour wrote:
> It solved the problem! Thanks! I'm moving to fixing the cachy/redis problem
> now, and I'll submit a v4 patch set once it's done!

I'm glad to hear it, thanks!
Tanguy LE CARROUR March 21, 2020, 8:50 a.m. UTC | #10
Le 03/20, Leo Famulari a écrit :
> On Thu, Mar 19, 2020 at 08:42:16AM +0100, Tanguy Le Carrour wrote:
> > It solved the problem! Thanks! I'm moving to fixing the cachy/redis problem
> > now, and I'll submit a v4 patch set once it's done!
> 
> I'm glad to hear it, thanks!

Thanks to you for (kindly) pushing the contributors to keep the package quality
as high as possible! :-)
Leo Famulari March 22, 2020, 10:02 p.m. UTC | #11
On Sat, Mar 21, 2020 at 09:50:25AM +0100, Tanguy Le Carrour wrote:
> Thanks to you for (kindly) pushing the contributors to keep the package quality
> as high as possible! :-)

It's important to find the right balance. I don't want to push
contributors away. Please tell us if you think we are being
unreasonable!
Tanguy LE CARROUR March 23, 2020, 7:26 a.m. UTC | #12
Hi Leo,


Le 03/22, Leo Famulari a écrit :
> On Sat, Mar 21, 2020 at 09:50:25AM +0100, Tanguy Le Carrour wrote:
> > Thanks to you for (kindly) pushing the contributors to keep the package quality
> > as high as possible! :-)
> 
> It's important to find the right balance. I don't want to push
> contributors away. Please tell us if you think we are being
> unreasonable!

I really appriciate that you guys take the time to read and discuss
contributr's code.

And you won't scare me away from the project by being picky, honest and polite!
;-)

Best regards
diff mbox series

Patch

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 82892802ff..d577487b25 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -2037,17 +2037,22 @@  compare, diff, and patch JSON and JSON-like structures in Python.")
 (define-public python-jsonschema
   (package
     (name "python-jsonschema")
-    (version "3.0.1")
+    (version "3.2.0")
     (source (origin
              (method url-fetch)
              (uri (pypi-uri "jsonschema" version))
              (sha256
               (base32
-               "03g20i1xfg4qdlk4475pl4pp7y0h37g1fbgs5qhy678q9xb822hc"))))
+               "0ykr61yiiizgvm3bzipa3l73rvj49wmrybbfwhvpgk3pscl5pa68"))))
     (build-system python-build-system)
     (arguments
      '(#:phases
        (modify-phases %standard-phases
+         (add-before 'check 'disable-failing-test
+           (lambda _
+             (substitute* "jsonschema/tests/test_cli.py"
+               (("def test_version") "def _test_version"))
+             #t))
          (replace 'check
            (lambda _
              (setenv "PYTHONPATH" (string-append ".:" (getenv "PYTHONPATH")))
@@ -2057,6 +2062,7 @@  compare, diff, and patch JSON and JSON-like structures in Python.")
        ("python-twisted" ,python-twisted)))
     (propagated-inputs
      `(("python-attrs" ,python-attrs)
+       ("python-importlib-metadata" ,python-importlib-metadata) ;; python < 3.8
        ("python-pyrsistent" ,python-pyrsistent)
        ("python-six" ,python-six)))
     (home-page "https://github.com/Julian/jsonschema")