From patchwork Tue Feb 4 13:56:05 2020 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Lars-Dominik Braun X-Patchwork-Id: 20104 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 35740168C9; Tue, 4 Feb 2020 13:57:48 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.2 (2018-09-13) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.8 required=5.0 tests=BAYES_00,DKIM_SIGNED, MAILING_LIST_MULTI,T_DKIM_INVALID,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.2 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTP id DF271168BA for ; Tue, 4 Feb 2020 13:57:47 +0000 (GMT) Received: from localhost ([::1]:58906 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1iyyi3-00007t-B5 for patchwork@mira.cbaines.net; Tue, 04 Feb 2020 08:57:47 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]:55105) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1iyyhV-0007rY-CL for guix-patches@gnu.org; Tue, 04 Feb 2020 08:57:14 -0500 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1iyyhU-0000XZ-99 for guix-patches@gnu.org; Tue, 04 Feb 2020 08:57:13 -0500 Received: from debbugs.gnu.org ([209.51.188.43]:36954) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_128_CBC_SHA1:16) (Exim 4.71) (envelope-from ) id 1iyyhU-0000Ws-4e for guix-patches@gnu.org; Tue, 04 Feb 2020 08:57:12 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1iyyhU-0008Hh-2v for guix-patches@gnu.org; Tue, 04 Feb 2020 08:57:12 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#39416] [PATCH 13/34] gnu: Add package r-msm Resent-From: Lars-Dominik Braun Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Tue, 04 Feb 2020 13:57:12 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 39416 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: To: 39416@debbugs.gnu.org Cc: Lars-Dominik Braun Received: via spool by 39416-submit@debbugs.gnu.org id=B39416.158082462331623 (code B ref 39416); Tue, 04 Feb 2020 13:57:12 +0000 Received: (at 39416) by debbugs.gnu.org; 4 Feb 2020 13:57:03 +0000 Received: from localhost ([127.0.0.1]:42883 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iyyhK-0008Dg-Ua for submit@debbugs.gnu.org; Tue, 04 Feb 2020 08:57:03 -0500 Received: from mail-wm1-f48.google.com ([209.85.128.48]:36805) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iyyhG-0008Af-HS for 39416@debbugs.gnu.org; Tue, 04 Feb 2020 08:56:58 -0500 Received: by mail-wm1-f48.google.com with SMTP id p17so3793725wma.1 for <39416@debbugs.gnu.org>; Tue, 04 Feb 2020 05:56:58 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=leibniz-psychology-org.20150623.gappssmtp.com; s=20150623; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=neHS5s2fFyrcm4kp/2bLFi6uy9BTDszVRAIPPQ6hteI=; b=ObCzVLbjtiNsyKwPFqTPv7DMoFQHrG4E+H5HxnKa8L/RDTYQw/aOXiEyk58SYzC68y FcT3jBbMUFnX8uyQEmEpV/pH/oRh5oqJVZ+xzrByikCQ+DyzAAXD+M+gnz0qrU59mzaY MlTE2TwX1LSd+Asf65GS19mMX2O3MtfdtUcTvgM4aFfuRoHug3m0ifidaMQcnaUH4fuF bgHDTXqrHWduVNns5YE98HLQr+Bnyl+RtKuvpY4EakrAGy8sJlKvd4uEN6M29Pu1ADyT cMqqjx1X8FFX1I6aeclS0uk42N8ydPxaSY/q/cl4gk/Sv2vjI1oZqW3KJii2GCbc72RX 2VqQ== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=neHS5s2fFyrcm4kp/2bLFi6uy9BTDszVRAIPPQ6hteI=; b=OatTIsJiWMCdlV7N+YmTRhi1HRyYg9NXEVrkoXWz5kUGPccCaMkdKLtC5ROvxAn7Nk nGZyvP74MqmOt4RkepUjTbRUl+U5Acvs1/ewN+z+fe3GVBBX3SaGd75JerosqI1ViEBR ZXo0Zp5+OMSCFrDXUlchGf0CU9LKryWWK4Dnfx7DrG9Ru74WIvoqzku3x9inaIgoBvPv uUb9Po943hGw/CHn8+hVnahjWA5jx9onlfRZI5pcEAQ5+d9xXMf0SYK/8MFm8Rhgbg6g 0f3f/1j+6QYrOe4SKi/qtz5wJK7JeCUJPbMQbLvIBLvSnBgCsP5NZ6RYcbCYblrWy4Yq LgiQ== X-Gm-Message-State: APjAAAVNyjV9ZoEg9lE8mdBZ9r9KbNoLnUMggpZSPdN7ge2hDPmNBr3u nbYtBDef8gZxFvk9ayJLDEhhFzrXxqmdXEc5aestGaCJXdRAjJKjTjAA8Lpg8liBiHe1yqrX8Nq NmaDGmCQWBSSlOoPeyWdFnhK6OyKZ6QBErwpBxqhhmAJmHb8XjGpzCPur7NlhWtt18SZQTiOWg2 VM1llt5msk X-Google-Smtp-Source: APXvYqwkvdY5cDs6jsO69yNajsjjIewchDt+FqIP2vh85h+lyq3TEUxLzrqkXKi3vEmgBVeH92rR4Q== X-Received: by 2002:a1c:7c05:: with SMTP id x5mr5940252wmc.15.1580824612703; Tue, 04 Feb 2020 05:56:52 -0800 (PST) Received: from zpidnp36.uni-trier.de (zpidlx9.uni-trier.de. [136.199.85.49]) by smtp.gmail.com with ESMTPSA id p26sm3751179wmc.24.2020.02.04.05.56.52 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Tue, 04 Feb 2020 05:56:52 -0800 (PST) From: Lars-Dominik Braun Date: Tue, 4 Feb 2020 14:56:05 +0100 Message-Id: <20200204135626.28261-13-ldb@leibniz-psychology.org> X-Mailer: git-send-email 2.20.1 In-Reply-To: <20200204135626.28261-1-ldb@leibniz-psychology.org> References: <20200204135626.28261-1-ldb@leibniz-psychology.org> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-detected-operating-system: by eggs.gnu.org: GNU/Linux 2.2.x-3.x [generic] X-Received-From: 209.51.188.43 X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/cran.scm (r-msm): New variable. --- gnu/packages/cran.scm | 29 +++++++++++++++++++++++++++++ 1 file changed, 29 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 8c436d4c75..8606695b7c 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -19604,3 +19604,32 @@ et al (2016) . Vignette is Roberts et al methods or ML, optionally with standard errors; tetrachoric and biserial correlations are special cases.") (license license:gpl2+))) + +(define-public r-msm + (package + (name "r-msm") + (version "1.6.8") + (source + (origin + (method url-fetch) + (uri (cran-uri "msm" version)) + (sha256 + (base32 + "1d32y8f0vb2dfv3999liigpns788j145nrvd1xpxb9i2lsg8mwgk")))) + (properties `((upstream-name . "msm"))) + (build-system r-build-system) + (propagated-inputs + `(("r-expm" ,r-expm) + ("r-mvtnorm" ,r-mvtnorm) + ("r-survival" ,r-survival))) + (home-page "https://github.com/chjackson/msm") + (synopsis + "Multi-State Markov and Hidden Markov Models in Continuous Time") + (description + "This package provides functions for fitting continuous-time Markov and +hidden Markov multi-state models to longitudinal data. Designed for processes +observed at arbitrary times in continuous time (panel data) but some other +observation schemes are supported. Both Markov transition rates and the hidden +Markov output process can be modelled in terms of covariates, which may be +constant or piecewise-constant in time.") + (license license:gpl2+)))