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Resent-From: zimoun Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Wed, 30 Oct 2019 10:26:04 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 37988 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 37988@debbugs.gnu.org Cc: zimoun Received: via spool by 37988-submit@debbugs.gnu.org id=B37988.157243116121166 (code B ref 37988); Wed, 30 Oct 2019 10:26:04 +0000 Received: (at 37988) by debbugs.gnu.org; 30 Oct 2019 10:26:01 +0000 Received: from localhost ([127.0.0.1]:49296 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iPlAu-0005VD-NS for submit@debbugs.gnu.org; Wed, 30 Oct 2019 06:26:01 -0400 Received: from mail-wr1-f68.google.com ([209.85.221.68]:39867) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iPlAh-0005U4-9D for 37988@debbugs.gnu.org; Wed, 30 Oct 2019 06:25:52 -0400 Received: by mail-wr1-f68.google.com with SMTP id a11so1643415wra.6 for <37988@debbugs.gnu.org>; Wed, 30 Oct 2019 03:25:47 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=IRQX+ltzgQQQCLJNrNgluNhY+yKeEN3wmYeHe2/L9Gc=; b=X4axORuWVXmRxnoXVcQdoZcvwOMLOS52xSOlBC0PH48QmPWP7Nnjx7myhw814kGOCq s/IgG1Rk8FJGIS4s+JWPOk09M3wD/5mCOZnbcs2yQdJngq+UR+wy8LtyFMxU9p28JG/U PR+iRIRfR46XFhnmJhm7h0bi/TxEIIMsareyDODoeK87bU/cbGth44NT2TJOy9DkAqPb T9BI0upSC391cC9zC8/F6YFiedrTKH/nFO7PKeud/2IGBjcfQpa98KVKFjXBBmBRyWcK Gg7Yzvg3/TdnFz0ohvnohawdo8KwMAV2vif6CL2YLdQInYOOjkufKTlTFMzSpHMivCC7 uWQA== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=IRQX+ltzgQQQCLJNrNgluNhY+yKeEN3wmYeHe2/L9Gc=; b=Z2UFmiNU0x0DFLFij3lkR1ekZZLpwi9TT9RC31MQs6wRNzG+a8xWCLWI4O2jPCUcGR M1HNBDbKDV3iVge+qY+ded856J/x8pGsWfZ/RHv6amf4+otJO+nK0piW3VdnE3cTYWcN tY9L/QxIXQj0AYlCGJjikd535YR+Zp2BHtx+0jZFpGoAVMK2uD2bZRXfkrqr3733nB+7 AGhYgqS46B+Z4KMHoCEo4hUv3zLHb0wcePVji+xDt2RkN5bP3FT4Z+FWdzSCLqj8kRvn 55/PKzOu4O5nDkaKIdLkrveZwF/UfQgh4GC+mcp3Fe+cRpMcaSfyBhKx5gYuRUvI85R/ QYOQ== X-Gm-Message-State: APjAAAV86jMSuUdnwvaM+uEQP6HdiLz+pdRgPvXIAROJJHbb0BCf56XS znrUkHf9QGFy2EEJiw66ZW9X+2h+ X-Google-Smtp-Source: APXvYqyduEC57JABGmz9n6Z9134SIPlSSPsymLWu9z6tf7leY7U/gmyCsIfBvWUFUs8S7tlqOdtQvA== X-Received: by 2002:a5d:49c9:: with SMTP id t9mr24899332wrs.146.1572431141271; Wed, 30 Oct 2019 03:25:41 -0700 (PDT) Received: from pfiuh02.univ-paris-diderot.fr ([193.48.40.241]) by smtp.gmail.com with ESMTPSA id x205sm2493321wmb.5.2019.10.30.03.25.40 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Wed, 30 Oct 2019 03:25:40 -0700 (PDT) From: zimoun Date: Wed, 30 Oct 2019 11:25:28 +0100 Message-Id: <20191030102531.12495-3-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.23.0 In-Reply-To: <20191030102531.12495-1-zimon.toutoune@gmail.com> References: <20191030102531.12495-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-detected-operating-system: by eggs.gnu.org: GNU/Linux 2.2.x-3.x [generic] X-Received-From: 209.51.188.43 X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioconductor.scm (r-rprotobuflib): New variable. --- gnu/packages/bioconductor.scm | 39 +++++++++++++++++++++++++++++++++++ 1 file changed, 39 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 92e5d3ec0b..7c1761852c 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -6166,3 +6166,42 @@ data.") (synopsis "Visualization for flow cytometry data") (description "This package provides visualization tools for flow cytometry data.") (license license:artistic2.0))) + +(define-public r-rprotobuflib + (package + (name "r-rprotobuflib") + (version "1.6.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "RProtoBufLib" version)) + (sha256 + (base32 + "1vhwxw7281n5wpg30ik3m1gwarfmj4b8cqxdvj0sck44yx24lphg")))) + (properties + `((upstream-name . "RProtoBufLib"))) + (build-system r-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + ;; Contains unverified binaries: + ;; src/win/lib/{i386,x64}/libprotobuf.a + (add-after 'unpack 'remove-win-folder + (lambda _ + (delete-file-recursively "src/win") + #t)) + ;; Fix non-conventional packaging. + ;; The dependency to protobuf-2.6.0 is included as tgz and build + ;; by the R package itself. + (add-after 'unpack 'fix-wrong-hard-coded + (lambda _ + (with-directory-excursion "src" + (invoke "tar" "xf" "protobuf-2.6.0.tgz")) + (substitute* "src/protobuf-2.6.0/configure" + (("#! /bin/sh") (string-append "#!" (which "sh")))) + #t))))) + (home-page "https://bioconductor.org/packages/RProtoBufLib") + (synopsis "C++ headers and static libraries of Protocol buffers") + (description "This package provides the headers and static library of +Protocol buffers 2.6.0 for other R packages to compile and link against.") + (license license:bsd-3)))