From patchwork Wed Oct 30 10:25:27 2019 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Simon Tournier X-Patchwork-Id: 15894 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 2C52C17685; Wed, 30 Oct 2019 10:26:16 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.0 (2014-02-07) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-1.9 required=5.0 tests=BAYES_00,FREEMAIL_FROM, RCVD_IN_MSPIKE_H2,T_DKIM_INVALID,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.0 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTP id E1DEE17674 for ; Wed, 30 Oct 2019 10:26:15 +0000 (GMT) Received: from localhost ([::1]:38696 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1iPlB8-0007RB-Kt for patchwork@mira.cbaines.net; Wed, 30 Oct 2019 06:26:14 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:40254) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1iPlAy-0007QQ-Ud for guix-patches@gnu.org; Wed, 30 Oct 2019 06:26:06 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1iPlAx-0002jF-Iz for guix-patches@gnu.org; Wed, 30 Oct 2019 06:26:04 -0400 Received: from debbugs.gnu.org ([209.51.188.43]:40480) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_128_CBC_SHA1:16) (Exim 4.71) (envelope-from ) id 1iPlAx-0002j4-Df for guix-patches@gnu.org; Wed, 30 Oct 2019 06:26:03 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1iPlAx-0005Vu-7X for guix-patches@gnu.org; Wed, 30 Oct 2019 06:26:03 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#37988] [PATCH 2/6] gnu: Add r-flowviz. Resent-From: zimoun Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Wed, 30 Oct 2019 10:26:03 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 37988 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 37988@debbugs.gnu.org Cc: zimoun Received: via spool by 37988-submit@debbugs.gnu.org id=B37988.157243116021151 (code B ref 37988); Wed, 30 Oct 2019 10:26:03 +0000 Received: (at 37988) by debbugs.gnu.org; 30 Oct 2019 10:26:00 +0000 Received: from localhost ([127.0.0.1]:49292 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iPlAp-0005V0-T7 for submit@debbugs.gnu.org; Wed, 30 Oct 2019 06:25:56 -0400 Received: from mail-wm1-f65.google.com ([209.85.128.65]:52830) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1iPlAg-0005U2-Or for 37988@debbugs.gnu.org; Wed, 30 Oct 2019 06:25:47 -0400 Received: by mail-wm1-f65.google.com with SMTP id p21so1491399wmg.2 for <37988@debbugs.gnu.org>; Wed, 30 Oct 2019 03:25:46 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=nUws7C2qD+TDFt4SyqllH9cDNq7wx4R1DjuW4Rh2tFA=; b=u5k+aelhh9+Q6ZA5qOSdTIPNuRFG4RU3xAQ/e3HuBNKSaXFwlyZD7AFpzFhukkm2/O lSbx/0i9bcBZdgYeTF9WUoOz/MYvJOzCoHpXos7j4cTZjSWZBJPkREhLH5pmUxGXPNgj L8rVh9xi7bx3raCn+ywp348RafqWMXR/47NNG18BQTnQ2WLD2ZqIwMsyJ1Cauib7GLi4 wdrRyK3WhPX/RWFE64xj/sr2WJaySQcsple1uQutjJvFBg3xA23nhq20j/0lHmcLjoUE GTODQ4mGtNbYz4QlspuHKSi3MGjgbJztm5ZGApg2Uie9wZnbuzQD7p+HGpXhX0xaDfNW VqXw== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=nUws7C2qD+TDFt4SyqllH9cDNq7wx4R1DjuW4Rh2tFA=; b=Mo3h/Q/RnpZPYMQRmIHnXMTV1p31JlO7cqdLweVHR8pKpPyvj5/hJc60RlPDWet85J J07WNU9AxPf57g8g+9d7JQppreMOdUnLYAPzraBs9OOME+LObcWgWvuNta0rcmnErLQH CE205fVXzhTEQZd6k1VTFufqU4MU1ehVfwAqOWjxfgKsDgSjOnm4Ru/NKZaGhJ9k7pTk rJpqa+AlX920891pK2R7YwhnnybQfTVO62BbCM8UxEXvwh4JUsovBdp3YTEov7IScyWL m4p+ZSwasYkd1I8REAIyhqxQXPzHj1Bf/yYd2eR+vzgerPf1txOJYarEn4LLsU2hK7c1 5/7g== X-Gm-Message-State: APjAAAU9hMBCgejnYWGQLTBmsgcF0XKMGdEqosDU6b3qAVmno0ajlOZg bmj5r7/IfcYXZ0aczkt9xsIwh/nc X-Google-Smtp-Source: APXvYqyaBbTmW0uzF2eqLBSVCoIeTEcfR14FsRPSiiF1H1GSnSE2mzeWEB9mhCL8sEkFuBZIYleoHA== X-Received: by 2002:a7b:c76d:: with SMTP id x13mr8375901wmk.155.1572431140703; Wed, 30 Oct 2019 03:25:40 -0700 (PDT) Received: from pfiuh02.univ-paris-diderot.fr ([193.48.40.241]) by smtp.gmail.com with ESMTPSA id x205sm2493321wmb.5.2019.10.30.03.25.40 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Wed, 30 Oct 2019 03:25:40 -0700 (PDT) From: zimoun Date: Wed, 30 Oct 2019 11:25:27 +0100 Message-Id: <20191030102531.12495-2-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.23.0 In-Reply-To: <20191030102531.12495-1-zimon.toutoune@gmail.com> References: <20191030102531.12495-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-detected-operating-system: by eggs.gnu.org: GNU/Linux 2.2.x-3.x [generic] X-Received-From: 209.51.188.43 X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioconductor.scm (r-flowviz): New variable. --- gnu/packages/bioconductor.scm | 29 +++++++++++++++++++++++++++++ 1 file changed, 29 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 6467fecb8c..92e5d3ec0b 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -6137,3 +6137,32 @@ features (e.g. genes, microRNAs).") data. This modified test allows for testing differential expression in qPCR data.") (license license:gpl2+))) + +(define-public r-flowviz + (package + (name "r-flowviz") + (version "1.48.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "flowViz" version)) + (sha256 + (base32 + "00zwfzpdln62160h1ahcki5b96y06a1na7xjqs63b7571318xj20")))) + (properties + `((upstream-name . "flowViz"))) + (build-system r-build-system) + (propagated-inputs + `(("r-biobase" ,r-biobase) + ("r-flowcore" ,r-flowcore) + ("r-hexbin" ,r-hexbin) + ("r-idpmisc" ,r-idpmisc) + ("r-kernsmooth" ,r-kernsmooth) + ("r-lattice" ,r-lattice) + ("r-latticeextra" ,r-latticeextra) + ("r-mass" ,r-mass) + ("r-rcolorbrewer" ,r-rcolorbrewer))) + (home-page "https://bioconductor.org/packages/flowViz") + (synopsis "Visualization for flow cytometry data") + (description "This package provides visualization tools for flow cytometry data.") + (license license:artistic2.0)))