From patchwork Wed Jul 24 18:21:59 2019 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Simon Tournier X-Patchwork-Id: 14763 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id A5A1817270; Wed, 24 Jul 2019 19:23:14 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.0 (2014-02-07) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-1.9 required=5.0 tests=BAYES_00,FREEMAIL_FROM, T_DKIM_INVALID,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.0 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTP id 68A8A1726E for ; Wed, 24 Jul 2019 19:23:14 +0100 (BST) Received: from localhost ([::1]:54018 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.86_2) (envelope-from ) id 1hqLuz-0003nQ-SP for patchwork@mira.cbaines.net; Wed, 24 Jul 2019 14:23:13 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:41432) by lists.gnu.org with esmtp (Exim 4.86_2) (envelope-from ) id 1hqLuu-0003XK-18 for guix-patches@gnu.org; Wed, 24 Jul 2019 14:23:09 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1hqLus-0008T4-S6 for guix-patches@gnu.org; Wed, 24 Jul 2019 14:23:07 -0400 Received: from debbugs.gnu.org ([209.51.188.43]:57425) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_128_CBC_SHA1:16) (Exim 4.71) (envelope-from ) id 1hqLus-0008Sn-OC for guix-patches@gnu.org; Wed, 24 Jul 2019 14:23:06 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1hqLus-0005PQ-KP for guix-patches@gnu.org; Wed, 24 Jul 2019 14:23:06 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#36795] [PATCH 06/11] gnu: Add r-consensusclusterplus. Resent-From: zimoun Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Wed, 24 Jul 2019 18:23:06 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 36795 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 36795@debbugs.gnu.org X-Debbugs-Original-To: guix-patches@gnu.org Received: via spool by submit@debbugs.gnu.org id=B.156399255320617 (code B ref -1); Wed, 24 Jul 2019 18:23:06 +0000 Received: (at submit) by debbugs.gnu.org; 24 Jul 2019 18:22:33 +0000 Received: from localhost ([127.0.0.1]:37991 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1hqLuK-0005ML-QO for submit@debbugs.gnu.org; Wed, 24 Jul 2019 14:22:33 -0400 Received: from lists.gnu.org ([209.51.188.17]:42064) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1hqLuF-0005LG-7A for submit@debbugs.gnu.org; Wed, 24 Jul 2019 14:22:27 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:41096) by lists.gnu.org with esmtp (Exim 4.86_2) (envelope-from ) id 1hqLuE-0003Ix-6a for guix-patches@gnu.org; Wed, 24 Jul 2019 14:22:27 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1hqLuD-0007GU-4l for guix-patches@gnu.org; Wed, 24 Jul 2019 14:22:26 -0400 Received: from mail-wr1-x42e.google.com ([2a00:1450:4864:20::42e]:39999) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_128_CBC_SHA1:16) (Exim 4.71) (envelope-from ) id 1hqLuC-0007Eu-Ut for guix-patches@gnu.org; Wed, 24 Jul 2019 14:22:25 -0400 Received: by mail-wr1-x42e.google.com with SMTP id r1so47997542wrl.7 for ; Wed, 24 Jul 2019 11:22:24 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=from:to:cc:subject:date:message-id:in-reply-to:references :mime-version:content-transfer-encoding; bh=24W40LvZghPcbKV/H18xen7gsRhPS5H4z1oHo7bo37o=; b=rnqbXAjUbGifnfSO2GeQGZh0dc4in9l2FFDzbMa2r4+No3iWfFlW5kDSK6zMOmgtW3 2SMnZYV32ponjO/9S3WMrTgZZW3TKj4vKT4TA+OGqPVCsQ1Kg/CCrAgV51LJK+EL2pVb cl24I9l58S9hW8+IEZdFFQpSsJBtn4bLc2hnYKPB7QwnLTbuHGXvcXIRuSnwsn6wg0xw CKaCaxReizbyFrqw+dZBWZlq7BHHAEUibamWkZ+gsjagf9A9YRWbwwaoKCFu2Mz/vNMO 2ILflRcwss1a3vBgqXZOJRwqeeQP6EK/MvHX/VMjFqxFDsTVNvuDJG3/uJOprycZTT9w vTbQ== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:in-reply-to :references:mime-version:content-transfer-encoding; bh=24W40LvZghPcbKV/H18xen7gsRhPS5H4z1oHo7bo37o=; b=SIN8y4AD5vmwGOSqg6BYKYwOO3Bat+E6o7eBKJ0ikn4zdU3Jmj11ZqlmS/vkLTXlc7 CZFhqzi/V+vj0RzPAAzwf4mSFwLj2AlCumAIucL/vzR+yQF+oIk3+/1xk9A/Wcd4qjUm 0PMwv9ppAz1eIl4igDEPm9dRvEi0571rA/08p13G89s3ERE8fYbAn0qas1lSkc1ZJzXb gfcq4YDbwbB/xUYaUq14h96eG+L9qxdwp1Y9Zu23Jf1lY9wxAm6MM10NgumSP9llRH+w F86v+QC/uJJpCLUuyk2ICKqeSMgzax+I44cgwh/1mz681GFFHcgnMftPc/Msoi7SYwvi KdcA== X-Gm-Message-State: APjAAAXTDYOX7U62k1YMrKv+k/n+FLIJscrU9reWMjLutN92HPDg3f0Q aDAKjFMkKQFHSwy2hCdzY/qtD6mh X-Google-Smtp-Source: APXvYqwCXWThIC3B+SGJ91uJCfiUoKLOXuqkMDur6pAOubKmN3dlEbtcvfcg0Cj8OD6alf5bvtf3oQ== X-Received: by 2002:a5d:618d:: with SMTP id j13mr88213012wru.195.1563992543841; Wed, 24 Jul 2019 11:22:23 -0700 (PDT) Received: from pfiuh02.univ-paris-diderot.fr ([193.48.40.241]) by smtp.gmail.com with ESMTPSA id g12sm66116616wrv.9.2019.07.24.11.22.22 (version=TLS1_2 cipher=ECDHE-RSA-AES128-GCM-SHA256 bits=128/128); Wed, 24 Jul 2019 11:22:23 -0700 (PDT) From: zimoun Date: Wed, 24 Jul 2019 20:21:59 +0200 Message-Id: <20190724182204.6818-7-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.22.0 In-Reply-To: <20190724182204.6818-1-zimon.toutoune@gmail.com> References: <20190724182204.6818-1-zimon.toutoune@gmail.com> MIME-Version: 1.0 X-detected-operating-system: by eggs.gnu.org: Genre and OS details not recognized. X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-detected-operating-system: by eggs.gnu.org: GNU/Linux 2.2.x-3.x [generic] X-Received-From: 209.51.188.43 X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/bioconductor.scm (r-consensusclusterplus): New variable. --- gnu/packages/bioconductor.scm | 25 +++++++++++++++++++++++++ 1 file changed, 25 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index d79ff729fc..d5bd512972 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -4827,6 +4827,31 @@ and to both short and long sequence reads.") "Provides utilities for flow cytometry data.") (license license:artistic2.0))) +(define-public r-consensusclusterplus + (package + (name "r-consensusclusterplus") + (version "1.48.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "ConsensusClusterPlus" version)) + (sha256 + (base32 + "1mlcm3wq5n8s0gxs35j0ph9576fhbrbrrsj2xy84fy20prcfs4w8")))) + (properties + `((upstream-name . "ConsensusClusterPlus"))) + (build-system r-build-system) + (propagated-inputs + `(("r-all" ,r-all) + ("r-biobase" ,r-biobase) + ("r-cluster" ,r-cluster))) + (home-page + "https://bioconductor.org/packages/ConsensusClusterPlus") + (synopsis "Clustering algorithm") + (description + "Algorithm for determining cluster count and membership by stability evidence in unsupervised analysis.") + (license license:gpl2))) + (define-public r-flowcore (package (name "r-flowcore")