From patchwork Wed Jul 24 18:21:54 2019 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Simon Tournier X-Patchwork-Id: 14758 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id E833817270; Wed, 24 Jul 2019 19:23:07 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.0 (2014-02-07) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-1.9 required=5.0 tests=BAYES_00,FREEMAIL_FROM, T_DKIM_INVALID,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.0 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTP id A914F1726E for ; Wed, 24 Jul 2019 19:23:07 +0100 (BST) Received: from localhost ([::1]:54006 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.86_2) (envelope-from ) id 1hqLut-0003Qm-BA for patchwork@mira.cbaines.net; Wed, 24 Jul 2019 14:23:07 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:41339) by lists.gnu.org with esmtp (Exim 4.86_2) (envelope-from ) id 1hqLuq-0003Ma-1K for guix-patches@gnu.org; Wed, 24 Jul 2019 14:23:05 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1hqLuo-0008Nr-V4 for guix-patches@gnu.org; Wed, 24 Jul 2019 14:23:03 -0400 Received: from debbugs.gnu.org ([209.51.188.43]:57415) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_128_CBC_SHA1:16) (Exim 4.71) (envelope-from ) id 1hqLuo-0008Nb-S7 for guix-patches@gnu.org; Wed, 24 Jul 2019 14:23:02 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1hqLuo-0005OD-NQ for guix-patches@gnu.org; Wed, 24 Jul 2019 14:23:02 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#36790] [PATCH 01/11] gnu: Add r-umap. 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X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-detected-operating-system: by eggs.gnu.org: GNU/Linux 2.2.x-3.x [generic] X-Received-From: 209.51.188.43 X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/cran.scm (r-umap): New variable. --- gnu/packages/cran.scm | 27 +++++++++++++++++++++++++++ 1 file changed, 27 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 3f0d819df7..768a7d09c5 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -14530,3 +14530,30 @@ including regression, classification and ranking. The package is made to be extensible, so that users are also allowed to define their own objectives easily.") (license license:asl2.0))) + +(define-public r-umap + (package + (name "r-umap") + (version "0.2.2.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "umap" version)) + (sha256 + (base32 + "1s82w9gy1387h7cprjfbhp49l89zbmn3gc9s0wzqb1s73nza9n31")))) + (build-system r-build-system) + (propagated-inputs + `(("r-rcpp" ,r-rcpp) + ("r-reticulate" ,r-reticulate) + ("r-rspectra" ,r-rspectra))) + (home-page "https://github.com/tkonopka/umap") + (synopsis + "Uniform Manifold Approximation and Projection") + (description + "Uniform manifold approximation and projection is a technique for +dimension reduction. The algorithm was described by McInnes and Healy (2018) +in . This package provides an interface to the UMAP +algorithm in R, including a translation of the original algorithm into R with +minimal dependencies.") + (license license:expat)))