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Change-Id: I5b799986064f2af5fe74454f2e78fea7d9947260 --- gnu/packages/bioinformatics.scm | 43 +++++++++++++++++++++++++++++++++ 1 file changed, 43 insertions(+) base-commit: 2b2337f275a6421a0d0964c54987df4ac74162e6 diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index cecd94bbb7..3282258b48 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -14096,6 +14096,49 @@ (define-public sambamba sort, markdup, and depth.") (license license:gpl2+))) +(define-public r-rphyloxml + (let ((commit "a30e39249239b2de01d6964ae2a2205a6c48b475") + (revision "1")) + (package + (name "r-rphyloxml") + (version (git-version "0.0-9000" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/USCbiostats/rphyloxml") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "15ijzqvjxx6vqyqlg5asdbqlhw1g0ix6palf1rism3si0qapddgw")))) + (properties `((upstream-name . "rphyloxml"))) + (build-system r-build-system) + (arguments + (list + #:modules '((guix build r-build-system) + (guix build minify-build-system) + (guix build utils) + (ice-9 match)) + #:imported-modules `(,@%r-build-system-modules (guix build + minify-build-system)) + #:phases '(modify-phases %standard-phases + (add-after 'unpack 'process-javascript + (lambda* (#:key inputs #:allow-other-keys) + (with-directory-excursion "inst/" + (for-each (match-lambda + ((source . target) (minify source + #:target + target))) + '()))))))) + (propagated-inputs (list r-ape r-xml2)) + (native-inputs (list esbuild)) + (home-page "https://github.com/USCbiostats/rphyloxml") + (synopsis "Read and write phyloXML files in R") + (description + "The package reads phylogenetic data in the @code{phyloXML} format. +It also includes functions for writing data in this format.") + (license license:expat)))) + (define-public ritornello (package (name "ritornello")