From patchwork Mon Nov 12 16:00:34 2018 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Paul Garlick X-Patchwork-Id: 183 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 9BD4F167F7; Mon, 12 Nov 2018 16:04:24 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.0 (2014-02-07) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-6.9 required=5.0 tests=BAYES_00,RCVD_IN_DNSWL_HI, URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.0 Received: from lists.gnu.org (lists.gnu.org [IPv6:2001:4830:134:3::11]) by mira.cbaines.net (Postfix) with ESMTPS id 543D9167F5 for ; Mon, 12 Nov 2018 16:04:24 +0000 (GMT) Received: from localhost ([::1]:49364 helo=lists.gnu.org) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1gMEhL-0004Mg-Gm for patchwork@mira.cbaines.net; Mon, 12 Nov 2018 11:04:23 -0500 Received: from eggs.gnu.org ([2001:4830:134:3::10]:36540) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1gMEh8-0004Hk-Vd for guix-patches@gnu.org; Mon, 12 Nov 2018 11:04:12 -0500 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1gMEh5-0004ir-Nj for guix-patches@gnu.org; Mon, 12 Nov 2018 11:04:10 -0500 Received: from debbugs.gnu.org ([208.118.235.43]:44002) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_128_CBC_SHA1:16) (Exim 4.71) (envelope-from ) id 1gMEh0-0004fF-Iq for guix-patches@gnu.org; Mon, 12 Nov 2018 11:04:03 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1gMEh0-0000zO-Dv for guix-patches@gnu.org; Mon, 12 Nov 2018 11:04:02 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#33059] [PATCH v2 2/9] gnu: Add python-petsc4py. Resent-From: Paul Garlick Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 12 Nov 2018 16:04:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 33059 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: moreinfo patch To: 33059@debbugs.gnu.org, Efraim Flashner , Eric Bavier , Ludovic =?utf-8?q?Court=C3=A8s?= Received: via spool by 33059-submit@debbugs.gnu.org id=B33059.15420385913633 (code B ref 33059); Mon, 12 Nov 2018 16:04:02 +0000 Received: (at 33059) by debbugs.gnu.org; 12 Nov 2018 16:03:11 +0000 Received: from localhost ([127.0.0.1]:48238 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1gMEgA-0000wT-QV for submit@debbugs.gnu.org; Mon, 12 Nov 2018 11:03:11 -0500 Received: from smtp.hosts.co.uk ([85.233.160.19]:62740) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1gMEg9-0000w4-6E for 33059@debbugs.gnu.org; Mon, 12 Nov 2018 11:03:09 -0500 Received: from [79.123.23.187] (helo=parkin.tourbillion-technology.com.com) by smtp.hosts.co.uk with esmtpsa (TLSv1.2:ECDHE-RSA-AES128-GCM-SHA256:128) (Exim) (envelope-from ) id 1gMEg3-000500-7S; Mon, 12 Nov 2018 16:03:03 +0000 From: Paul Garlick Date: Mon, 12 Nov 2018 16:00:34 +0000 Message-Id: <1542038441-5738-3-git-send-email-pgarlick@tourbillion-technology.com> X-Mailer: git-send-email 1.8.3.1 In-Reply-To: <1542038441-5738-1-git-send-email-pgarlick@tourbillion-technology.com> References: <87k1m7vvjp.fsf@gnu.org> <1542038441-5738-1-git-send-email-pgarlick@tourbillion-technology.com> X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-detected-operating-system: by eggs.gnu.org: GNU/Linux 2.2.x-3.x [generic] X-Received-From: 208.118.235.43 X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Cc: Paul Garlick Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/maths.scm (python-petsc4py): New variable. --- gnu/packages/maths.scm | 35 +++++++++++++++++++++++++++++++++++ 1 file changed, 35 insertions(+) diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index 0d040bf..e36a574 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -1808,6 +1808,41 @@ scientific applications modeled by partial differential equations.") ,@(delete "--with-mpi=0" ,cf))))) (synopsis "Library to solve PDEs (with complex scalars and MPI support)"))) +(define-public python-petsc4py + (package + (name "python-petsc4py") + (version "3.9.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "petsc4py" version)) + (sha256 + (base32 + "1f8zd1ac9irsgkyqmzq30d9kl10fy1nh6zk312dhs43g449fkkhc")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-before 'build 'pre-build + (lambda _ + ;; Define path to PETSc installation. + (setenv "PETSC_DIR" (assoc-ref %build-inputs "petsc")) + #t)) + (add-before 'check 'mpi-setup + ,%openmpi-setup)))) + (inputs + `(("petsc" ,petsc-openmpi) + ("python-numpy" ,python-numpy))) + (home-page "https://bitbucket.org/petsc/petsc4py/") + (synopsis "Python bindings for PETSc") + (description "PETSc, the Portable, Extensible Toolkit for +Scientific Computation, is a suite of data structures and routines for +the scalable (parallel) solution of scientific applications modeled by +partial differential equations. It employs the MPI standard for all +message-passing communication. @code{petsc4py} provides Python +bindings to almost all functions of PETSc.") + (license license:bsd-3))) + (define-public python-kiwisolver (package (name "python-kiwisolver")