From patchwork Mon Nov 12 16:00:33 2018 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Patchwork-Submitter: Paul Garlick X-Patchwork-Id: 188 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id B7EAC167F7; Mon, 12 Nov 2018 16:04:47 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.0 (2014-02-07) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-6.9 required=5.0 tests=BAYES_00,RCVD_IN_DNSWL_HI, URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.0 Received: from lists.gnu.org (lists.gnu.org [IPv6:2001:4830:134:3::11]) by mira.cbaines.net (Postfix) with ESMTPS id 5BE04167F5 for ; Mon, 12 Nov 2018 16:04:47 +0000 (GMT) Received: from localhost ([::1]:49373 helo=lists.gnu.org) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1gMEhi-0004ab-7I for patchwork@mira.cbaines.net; Mon, 12 Nov 2018 11:04:46 -0500 Received: from eggs.gnu.org ([2001:4830:134:3::10]:36623) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1gMEhE-0004LJ-Le for guix-patches@gnu.org; Mon, 12 Nov 2018 11:04:19 -0500 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1gMEh5-0004ih-Mv for guix-patches@gnu.org; Mon, 12 Nov 2018 11:04:16 -0500 Received: from debbugs.gnu.org ([208.118.235.43]:44001) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_128_CBC_SHA1:16) (Exim 4.71) (envelope-from ) id 1gMEh0-0004ex-2r for guix-patches@gnu.org; Mon, 12 Nov 2018 11:04:03 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1gMEgz-0000zG-V8 for guix-patches@gnu.org; Mon, 12 Nov 2018 11:04:01 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#33059] [PATCH v2 1/9] gnu: Add python-mpi4py. Resent-From: Paul Garlick Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 12 Nov 2018 16:04:01 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 33059 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: moreinfo patch To: 33059@debbugs.gnu.org, Efraim Flashner , Eric Bavier , Ludovic =?utf-8?q?Court=C3=A8s?= Received: via spool by 33059-submit@debbugs.gnu.org id=B33059.15420385903627 (code B ref 33059); Mon, 12 Nov 2018 16:04:01 +0000 Received: (at 33059) by debbugs.gnu.org; 12 Nov 2018 16:03:10 +0000 Received: from localhost ([127.0.0.1]:48235 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1gMEg6-0000wF-8A for submit@debbugs.gnu.org; Mon, 12 Nov 2018 11:03:10 -0500 Received: from smtp.hosts.co.uk ([85.233.160.19]:62686) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1gMEg1-0000vW-5P for 33059@debbugs.gnu.org; Mon, 12 Nov 2018 11:03:04 -0500 Received: from [79.123.23.187] (helo=parkin.tourbillion-technology.com.com) by smtp.hosts.co.uk with esmtpsa (TLSv1.2:ECDHE-RSA-AES128-GCM-SHA256:128) (Exim) (envelope-from ) id 1gMEfv-000500-6s; Mon, 12 Nov 2018 16:02:55 +0000 From: Paul Garlick Date: Mon, 12 Nov 2018 16:00:33 +0000 Message-Id: <1542038441-5738-2-git-send-email-pgarlick@tourbillion-technology.com> X-Mailer: git-send-email 1.8.3.1 In-Reply-To: <1542038441-5738-1-git-send-email-pgarlick@tourbillion-technology.com> References: <87k1m7vvjp.fsf@gnu.org> <1542038441-5738-1-git-send-email-pgarlick@tourbillion-technology.com> MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-detected-operating-system: by eggs.gnu.org: GNU/Linux 2.2.x-3.x [generic] X-Received-From: 208.118.235.43 X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Cc: Paul Garlick Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches * gnu/packages/mpi.scm (python-mpi4py): New variable. --- gnu/packages/mpi.scm | 42 ++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 42 insertions(+) diff --git a/gnu/packages/mpi.scm b/gnu/packages/mpi.scm index fc8aade..f08a7f5 100644 --- a/gnu/packages/mpi.scm +++ b/gnu/packages/mpi.scm @@ -6,6 +6,7 @@ ;;; Copyright © 2017 Dave Love ;;; Copyright © 2017 Efraim Flashner ;;; Copyright © 2018 Tobias Geerinckx-Rice +;;; Copyright © 2018 Paul Garlick ;;; ;;; This file is part of GNU Guix. ;;; @@ -29,6 +30,7 @@ #:use-module (guix download) #:use-module (guix utils) #:use-module (guix build-system gnu) + #:use-module (guix build-system python) #:use-module (gnu packages) #:use-module (gnu packages gcc) #:use-module (gnu packages linux) @@ -263,3 +265,43 @@ only provides @code{MPI_THREAD_FUNNELED}."))) ;; in the build environment than the package wants while testing. (setenv "OMPI_MCA_rmaps_base_oversubscribe" "yes") #t)) + +(define-public python-mpi4py + (package + (name "python-mpi4py") + (version "3.0.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "mpi4py" version)) + (sha256 + (base32 + "1mzgd26dfv4vwbci8gq77ss9f0x26i9aqzq9b9vs9ndxhlnv0mxl")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'build 'mpi-setup + ,%openmpi-setup) + (add-before 'check 'pre-check + (lambda _ + ;; Skip BaseTestSpawn class (causes error 'ompi_dpm_dyn_init() + ;; failed --> Returned "Unreachable"' in chroot environment). + (substitute* "test/test_spawn.py" + (("unittest.skipMPI\\('openmpi\\(<3.0.0\\)'\\)") + "unittest.skipMPI('openmpi')")) + #t))))) + (inputs + `(("openmpi" ,openmpi))) + (home-page "https://bitbucket.org/mpi4py/mpi4py/") + (synopsis "Python bindings for the Message Passing Interface standard") + (description "MPI for Python (mpi4py) provides bindings of the Message +Passing Interface (MPI) standard for the Python programming language, allowing +any Python program to exploit multiple processors. + +mpi4py is constructed on top of the MPI-1/MPI-2 specification and provides an +object oriented interface which closely follows MPI-2 C++ bindings. It +supports point-to-point and collective communications of any picklable Python +object as well as optimized communications of Python objects (such as NumPy +arrays) that expose a buffer interface.") + (license bsd-3)))