From patchwork Sat Apr 27 12:34:48 2024 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Herman Rimm X-Patchwork-Id: 63440 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id D499327BBE9; Sat, 27 Apr 2024 13:42:51 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 6C8CA27BBE2 for ; Sat, 27 Apr 2024 13:42:49 +0100 (BST) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1s0hNq-00074a-8P; Sat, 27 Apr 2024 08:42:26 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1s0hNo-00073E-5I for guix-patches@gnu.org; Sat, 27 Apr 2024 08:42:24 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1s0hNn-0000qt-Sz for guix-patches@gnu.org; Sat, 27 Apr 2024 08:42:23 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1s0hO6-0005OR-88; Sat, 27 Apr 2024 08:42:42 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#70606] [PATCH rust-team 026/101] gnu: Place rust-rust-htslib-0.38 in alphabetical order. Resent-From: Herman Rimm Original-Sender: "Debbugs-submit" Resent-CC: efraim@flashner.co.il, guix-patches@gnu.org Resent-Date: Sat, 27 Apr 2024 12:42:41 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 70606 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 70606@debbugs.gnu.org Cc: Efraim Flashner X-Debbugs-Original-Xcc: Efraim Flashner Received: via spool by 70606-submit@debbugs.gnu.org id=B70606.171422171920113 (code B ref 70606); Sat, 27 Apr 2024 12:42:41 +0000 Received: (at 70606) by debbugs.gnu.org; 27 Apr 2024 12:41:59 +0000 Received: from localhost ([127.0.0.1]:39281 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1s0hNF-0005Cn-Cu for submit@debbugs.gnu.org; Sat, 27 Apr 2024 08:41:56 -0400 Received: from 81-205-150-117.fixed.kpn.net ([81.205.150.117]:53565 helo=email.rimm.ee) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1s0hJC-0004FX-9f for 70606@debbugs.gnu.org; Sat, 27 Apr 2024 08:37:42 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=rimm.ee; s=herman; t=1714221402; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version: content-transfer-encoding:content-transfer-encoding: in-reply-to:in-reply-to:references:references; bh=J3gIBHdMc2wyMbH+LAaOdMY6msRU6QrwjpSG/foKQCQ=; b=GNrocIWQSnGJHFUTuanWfewLZpNoIyXGlbR8elOxYgQ/G6ZnkcjcWjiAWhnE3+js4S9Qlr 18e3qK0Htz0L11iIjgd7s+nOkNvVScCXZas1GNyEotKXI87owHc7byYxlbtAqK4Uy7gJai 05mcuzUmT+AvLW0XuDmbJgvc68T6fRC1Dz2HfUqeYasFC9HWvqDIXY4laswBF1mbWMlAP6 X/qat4zHO817V4EFyMCp9Kz0uYNcfzNX/24eHlTQsbkNzbWe9c6GQgNqSmP66aTw0AKeH1 UDRWVBXEbSbjV87QruPUijoc+IsfQKHCYrUsD+Z85fByO/zgALcIm0Zd5ykVuQ== Received: by 81-205-150-117.fixed.kpn.net (OpenSMTPD) with ESMTPSA id c71537d2 (TLSv1.3:TLS_CHACHA20_POLY1305_SHA256:256:NO) for <70606@debbugs.gnu.org>; Sat, 27 Apr 2024 12:36:42 +0000 (UTC) Date: Sat, 27 Apr 2024 14:34:48 +0200 Message-ID: <107e7e71e9b6e1d94fea48ff3d8edb48a8b8e4ce.1714220243.git.herman@rimm.ee> X-Mailer: git-send-email 2.41.0 In-Reply-To: References: MIME-Version: 1.0 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Reply-to: Herman Rimm X-ACL-Warn: , Herman Rimm via Guix-patches X-Patchwork-Original-From: Herman Rimm via Guix-patches via From: Herman Rimm Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches * gnu/packages/crates-io.scm (rust-rust-htslib-0.38): Move variable. Change-Id: I0792e821d5ee8951abc1de89f0ad74e24d5e4406 --- gnu/packages/crates-io.scm | 83 ++++++++++++++++++-------------------- 1 file changed, 40 insertions(+), 43 deletions(-) diff --git a/gnu/packages/crates-io.scm b/gnu/packages/crates-io.scm index dd68a649d4..902da28db8 100644 --- a/gnu/packages/crates-io.scm +++ b/gnu/packages/crates-io.scm @@ -64090,49 +64090,6 @@ (define-public rust-rusqlite-macros-0.1 `(#:cargo-inputs (("rust-fallible-iterator" ,rust-fallible-iterator-0.3) ("rust-sqlite3-parser" ,rust-sqlite3-parser-0.12)))))) -(define-public rust-rust-htslib-0.38 - (package - (name "rust-rust-htslib") - (version "0.38.2") - (source (origin - (method url-fetch) - (uri (crate-uri "rust-htslib" version)) - (file-name (string-append name "-" version ".tar.gz")) - (sha256 - (base32 - "070sihnvyiyqcw8yjkdl8hvav598bsw36m722phgd2b394k6djia")))) - (build-system cargo-build-system) - (arguments - ;; TODO: cannot find openssl_src - `(#:skip-build? #t - #:cargo-inputs - (("rust-bio-types" ,rust-bio-types-0.12) - ("rust-byteorder" ,rust-byteorder-1) - ("rust-custom-derive" ,rust-custom-derive-0.1) - ("rust-derive-new" ,rust-derive-new-0.5) - ("rust-hts-sys" ,rust-hts-sys-2) - ("rust-ieee754" ,rust-ieee754-0.2) - ("rust-lazy-static" ,rust-lazy-static-1) - ("rust-libc" ,rust-libc-0.2) - ("rust-linear-map" ,rust-linear-map-1) - ("rust-newtype-derive" ,rust-newtype-derive-0.1) - ("rust-regex" ,rust-regex-1) - ("rust-serde" ,rust-serde-1) - ("rust-serde-bytes" ,rust-serde-bytes-0.11) - ("rust-thiserror" ,rust-thiserror-1) - ("rust-url" ,rust-url-2)) - #:cargo-development-inputs - (("rust-bincode" ,rust-bincode-1) - ("rust-pretty-assertions" ,rust-pretty-assertions-0.6)))) - (inputs (list openssl)) - (native-inputs (list pkg-config)) - (home-page "https://github.com/rust-bio/rust-htslib.git") - (synopsis "HTSlib bindings and API for reading and writing BAM files") - (description - "This library provides HTSlib bindings and a high level Rust API for -reading and writing BAM files.") - (license license:expat))) - (define-public rust-rust-base58-0.0 (package (name "rust-rust-base58") @@ -64515,6 +64472,46 @@ (define-public rust-rust-hawktracer-sys-0.4 "This package provides a sys crate for the rust_hawktracer library.") (license (list license:expat license:asl2.0)))) +(define-public rust-rust-htslib-0.38 + (package + (name "rust-rust-htslib") + (version "0.38.2") + (source + (origin + (method url-fetch) + (uri (crate-uri "rust-htslib" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "070sihnvyiyqcw8yjkdl8hvav598bsw36m722phgd2b394k6djia")))) + (build-system cargo-build-system) + (arguments + `(#:skip-build? #t + #:cargo-inputs (("rust-bio-types" ,rust-bio-types-0.12) + ("rust-byteorder" ,rust-byteorder-1) + ("rust-custom-derive" ,rust-custom-derive-0.1) + ("rust-derive-new" ,rust-derive-new-0.5) + ("rust-hts-sys" ,rust-hts-sys-2) + ("rust-ieee754" ,rust-ieee754-0.2) + ("rust-lazy-static" ,rust-lazy-static-1) + ("rust-libc" ,rust-libc-0.2) + ("rust-linear-map" ,rust-linear-map-1) + ("rust-newtype-derive" ,rust-newtype-derive-0.1) + ("rust-regex" ,rust-regex-1) + ("rust-serde" ,rust-serde-1) + ("rust-serde-bytes" ,rust-serde-bytes-0.11) + ("rust-thiserror" ,rust-thiserror-1) + ("rust-url" ,rust-url-2)) + #:cargo-development-inputs (("rust-bincode" ,rust-bincode-1) + ("rust-pretty-assertions" ,rust-pretty-assertions-0.6)))) + (inputs (list openssl)) + (native-inputs (list pkg-config)) + (home-page "https://github.com/rust-bio/rust-htslib.git") + (synopsis "HTSlib bindings and API for reading and writing BAM files") + (description + "This library provides HTSlib bindings and a high level Rust API for +reading and writing BAM files.") + (license license:expat))) + (define-public rust-rust-ini-0.18 (package (name "rust-rust-ini")