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Change-Id: Icb15a681d7f339ab25cb0a91feeaacc6a3e8cd6a --- gnu/packages/bioinformatics.scm | 50 +++++++++++++++++++++++++++++++++ 1 file changed, 50 insertions(+) base-commit: df3d30819e650a490ef39dd6692740bb13263c75 diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index aa6bce5591..437371bf89 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -19504,6 +19504,56 @@ (define-public python-arboreto tree-based ensemble regressors.") (license license:bsd-3))) +(define-public python-archspec + (package + (name "python-archspec") + (version "0.2.3") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/archspec/archspec") + (commit (string-append "v" version)) + (recursive? #t))) + (file-name (git-file-name name version)) + (sha256 + (base32 "03yfn4b9xg41pd7vls2cils77wkkb9si1h2qqvnkds661fdankqj")))) + (build-system pyproject-build-system) + (arguments + (list + #:phases '(modify-phases %standard-phases + ;; Numba needs a writable dir to cache functions. + (add-before 'build 'set-numba-cache-dir + (lambda _ + (setenv "NUMBA_CACHE_DIR" "/tmp")))))) + (propagated-inputs (list python-boltons + python-cooler + python-ctxcore + python-interlap + python-intervaltree + python-jsonschema + python-networkx + python-numba + python-poetry-core + pyscenic + python-scikit-learn + python-tables + python-typing-extensions)) + (native-inputs (list python-black + python-flake8 + python-isort + python-poetry-core + python-pylint + python-pytest + python-pytest-cov)) + (home-page "https://github.com/archspec/archspec") + (synopsis "Library to query system architecture") + (description + "Archspec offers human-readable labels for system architecture aspects. +These aspects include CPU, network fabrics, etc. In addition, it offers +APIs to detect, query, and compare them.") + (license license:expat))) + (define-public pyscenic ;; Latest commit from the update-pyarrow branch (let ((commit "5f170fdf474548c37ab381d1849c662820d658ee")