diff mbox series

[bug#44304] gnu: Update htslib to 1.11.

Message ID 08b421af5c82326cae13054e014e926b6b3c4ece.camel@gnu.org
State Accepted
Headers show
Series [bug#44304] gnu: Update htslib to 1.11. | expand

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Commit Message

Roel Janssen Oct. 29, 2020, 11:01 a.m. UTC 
On Thu, 2020-10-29 at 11:44 +0100, Roel Janssen wrote:
> Dear Guix,
> 
> I'd like to update htslib to 1.11.  The patch is straightfoward.
> 
> Kind regards,
> Roel Janssen

In addition to htslib, it'd be good to keep samtools and bcftools in
sync.  So here are the patches for bcftools and samtools.

Kind regards,
Roel Janssen

Comments

Ricardo Wurmus Oct. 29, 2020, 12:55 p.m. UTC | #1 
Roel Janssen <roel@gnu.org> writes:

> On Thu, 2020-10-29 at 11:44 +0100, Roel Janssen wrote:
>> Dear Guix,
>> 
>> I'd like to update htslib to 1.11.  The patch is straightfoward.
>> 
>> Kind regards,
>> Roel Janssen
>
> In addition to htslib, it'd be good to keep samtools and bcftools in
> sync.  So here are the patches for bcftools and samtools.

These patches look good to me!
Roel Janssen Oct. 29, 2020, 3:56 p.m. UTC | #2 
On Thu, 2020-10-29 at 13:55 +0100, Ricardo Wurmus wrote:
> 
> Roel Janssen <roel@gnu.org> writes:
> 
> > On Thu, 2020-10-29 at 11:44 +0100, Roel Janssen wrote:
> > > Dear Guix,
> > > 
> > > I'd like to update htslib to 1.11.  The patch is straightfoward.
> > > 
> > > Kind regards,
> > > Roel Janssen
> > 
> > In addition to htslib, it'd be good to keep samtools and bcftools
> > in
> > sync.  So here are the patches for bcftools and samtools.
> 
> These patches look good to me!
> 

Thank you for the quick review! I pushed them in
bcbd536e3f22e7bcce6ef535171f4257c79d2f0c,
04a49b414303c329032f74de67541cc39d2271c6, and
f40add4dbb45a5a87fd5213e23e7ab0cc77c008e.

Kind regards,
Roel Janssen
diff mbox series

Patch

From 20a16449cd640f32798cb36f942eb44faaa9f661 Mon Sep 17 00:00:00 2001
From: Roel Janssen <roel@gnu.org>
Date: Thu, 29 Oct 2020 11:57:16 +0100
Subject: [PATCH 2/3] gnu: Update bcftools to 1.11.

* gnu/packages/bioinformatics.scm (bcftools): Update to 1.11.
---
 gnu/packages/bioinformatics.scm | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 09216f6a8d..a428ba1fed 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -313,7 +313,7 @@  BAM files.")
 (define-public bcftools
   (package
     (name "bcftools")
-    (version "1.9")
+    (version "1.11")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://github.com/samtools/bcftools/"
@@ -321,11 +321,11 @@  BAM files.")
                                   version "/bcftools-" version ".tar.bz2"))
               (sha256
                (base32
-                "1j3h638i8kgihzyrlnpj82xg1b23sijibys9hvwari3fy7kd0dkg"))
+                "0r508mp15pqzf8r1269kb4v5naw9zsvbwd3cz8s1yj7carsf9viw"))
               (modules '((guix build utils)))
               (snippet '(begin
                           ;; Delete bundled htslib.
-                          (delete-file-recursively "htslib-1.9")
+                          (delete-file-recursively "htslib-1.11")
                           #t))))
     (build-system gnu-build-system)
     (arguments
-- 
2.26.2