@@ -1635,7 +1635,6 @@ dist_patch_DATA = \
%D%/packages/patches/openboardview-use-system-mpc.patch \
%D%/packages/patches/openbox-python3.patch \
%D%/packages/patches/opencolorio-fix-build-with-gcc11.patch \
- %D%/packages/patches/openfoam-4.1-cleanup.patch \
%D%/packages/patches/openjdk-9-pointer-comparison.patch \
%D%/packages/patches/openjdk-9-setsignalhandler.patch \
%D%/packages/patches/openjdk-10-idlj-reproducibility.patch \
deleted file mode 100644
@@ -1,243 +0,0 @@
-# This patch removes all need for the ThirdParty files of OpenFOAM.
-
-# Derived from EasyBuild patch by Ward Poelmans <wpoely86@gmail.com>.
-# Modified for GNU Guix by Paul Garlick <pgarlick@tourbillion-technology.com>.
-
-diff -ur OpenFOAM-4.x-version-4.1.org/applications/utilities/mesh/manipulation/setSet/Allwmake OpenFOAM-4.x-version-4.1/applications/utilities/mesh/manipulation/setSet/Allwmake
---- OpenFOAM-4.x-version-4.1.org/applications/utilities/mesh/manipulation/setSet/Allwmake
-+++ OpenFOAM-4.x-version-4.1/applications/utilities/mesh/manipulation/setSet/Allwmake
-@@ -9,7 +9,7 @@
- #
- # use readline if available
- #
--if [ -f /usr/include/readline/readline.h ]
-+if true
- then
- echo "Found <readline/readline.h> -- enabling readline support."
- export COMP_FLAGS="-DHAS_READLINE"
-diff -ur OpenFOAM-4.x-version-4.1.org/etc/bashrc OpenFOAM-4.x-version-4.1/etc/bashrc
---- OpenFOAM-4.x-version-4.1.org/etc/bashrc
-+++ OpenFOAM-4.x-version-4.1/etc/bashrc
-@@ -43,8 +43,10 @@
- # Please set to the appropriate path if the default is not correct.
- #
- [ $BASH_SOURCE ] && \
--export FOAM_INST_DIR=$(cd ${BASH_SOURCE%/*/*/*} && pwd -P) || \
-+export FOAM_INST_DIR=$(cd $(dirname $BASH_SOURCE)/../.. && pwd -P) || \
- export FOAM_INST_DIR=$HOME/$WM_PROJECT
-+# For GNU Guix: set initially for build then re-set at runtime
-+#
- # export FOAM_INST_DIR=~$WM_PROJECT
- # export FOAM_INST_DIR=/opt/$WM_PROJECT
- # export FOAM_INST_DIR=/usr/local/$WM_PROJECT
-diff -ur OpenFOAM-4.x-version-4.1.org/etc/config.sh/CGAL OpenFOAM-4.x-version-4.1/etc/config.sh/CGAL
---- OpenFOAM-4.x-version-4.1.org/etc/config.sh/CGAL
-+++ OpenFOAM-4.x-version-4.1/etc/config.sh/CGAL
-@@ -36,37 +36,7 @@
- #
- #------------------------------------------------------------------------------
-
--boost_version=boost-system
--cgal_version=cgal-system
--#cgal_version=CGAL-4.8
--
--if [ -z "$SOURCE_CGAL_VERSIONS_ONLY" ]
--then
--
-- common_path=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER
--
-- export BOOST_ARCH_PATH=$common_path/$boost_version
-- export CGAL_ARCH_PATH=$common_path/$cgal_version
--
-- if [ "$FOAM_VERBOSE" -a "$PS1" ]
-- then
-- echo "Using CGAL and boost" 1>&2
-- echo " $cgal_version at $CGAL_ARCH_PATH" 1>&2
-- echo " $boost_version at $BOOST_ARCH_PATH" 1>&2
-- fi
--
-- if [ -d "$CGAL_ARCH_PATH" -a "$cgal_version" != "cgal-system" ]
-- then
-- _foamAddLib $CGAL_ARCH_PATH/lib
-- fi
--
-- if [ -d "$BOOST_ARCH_PATH" -a "$boost_version" != "boost-system" ]
-- then
-- _foamAddLib $BOOST_ARCH_PATH/lib
-- fi
--
-- unset boost_version cgal_version common_path
--
--fi
-+export CGAL_ARCH_PATH=$CGAL_ROOT
-+export BOOST_ARCH_PATH=$BOOST_ROOT
-
- #------------------------------------------------------------------------------
-diff -ur OpenFOAM-4.x-version-4.1.org/etc/config.sh/gperftools OpenFOAM-4.x-version-4.1/etc/config.sh/gperftools
---- OpenFOAM-4.x-version-4.1.org/etc/config.sh/gperftools
-+++ OpenFOAM-4.x-version-4.1/etc/config.sh/gperftools
-@@ -29,13 +29,5 @@
- #
- #------------------------------------------------------------------------------
-
--version=svn
--gperftools_install=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER
--
--GPERFTOOLS_VERSION=gperftools-$version
--GPERFTOOLS_ARCH_PATH=$gperftools_install/$GPERFTOOLS_VERSION
--
--export PATH=$GPERFTOOLS_ARCH_PATH/bin:$PATH
--export LD_LIBRARY_PATH=$GPERFTOOLS_ARCH_PATH/lib:$LD_LIBRARY_PATH
-
- #------------------------------------------------------------------------------
-diff -ur OpenFOAM-4.x-version-4.1.org/etc/config.sh/metis OpenFOAM-4.x-version-4.1/etc/config.sh/metis
---- OpenFOAM-4.x-version-4.1.org/etc/config.sh/metis
-+++ OpenFOAM-4.x-version-4.1/etc/config.sh/metis
-@@ -34,7 +34,7 @@
- #
- #------------------------------------------------------------------------------
-
--export METIS_VERSION=metis-5.1.0
--export METIS_ARCH_PATH=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER$WM_PRECISION_OPTION$WM_LABEL_OPTION/$METIS_VERSION
-+export METIS_VERSION=metis-$METISVERSION
-+export METIS_ARCH_PATH=$METIS_ROOT
-
- #------------------------------------------------------------------------------
-diff -ur OpenFOAM-4.x-version-4.1.org/etc/config.sh/scotch OpenFOAM-4.x-version-4.1/etc/config.sh/scotch
---- OpenFOAM-4.x-version-4.1.org/etc/config.sh/scotch
-+++ OpenFOAM-4.x-version-4.1/etc/config.sh/scotch
-@@ -37,7 +37,7 @@
- #
- #------------------------------------------------------------------------------
-
--export SCOTCH_VERSION=scotch_6.0.3
--export SCOTCH_ARCH_PATH=$WM_THIRD_PARTY_DIR/platforms/$WM_ARCH$WM_COMPILER$WM_PRECISION_OPTION$WM_LABEL_OPTION/$SCOTCH_VERSION
-+export SCOTCH_VERSION=scotch_$SCOTCHVERSION
-+export SCOTCH_ARCH_PATH=$SCOTCH_ROOT
-
- #------------------------------------------------------------------------------
-diff -ur OpenFOAM-4.x-version-4.1.org/etc/config.sh/settings OpenFOAM-4.x-version-4.1/etc/config.sh/settings
---- OpenFOAM-4.x-version-4.1.org/etc/config.sh/settings
-+++ OpenFOAM-4.x-version-4.1/etc/config.sh/settings
-@@ -279,6 +279,9 @@
- ;;
- system)
- # Use system compiler
-+ # Use system GMP and MPFR packages
-+ export GMP_ARCH_PATH=$GMP_ROOT
-+ export MPFR_ARCH_PATH=$MPFR_ROOT
- ;;
- *)
- echo "Warn: WM_COMPILER_TYPE='$WM_COMPILER_TYPE' is unsupported" 1>&2
-diff -ur OpenFOAM-4.x-version-4.1.org/src/parallel/decompose/ptscotchDecomp/Make/options OpenFOAM-4.x-version-4.1/src/parallel/decompose/ptscotchDecomp/Make/options
---- OpenFOAM-4.x-version-4.1.org/src/parallel/decompose/ptscotchDecomp/Make/options
-+++ OpenFOAM-4.x-version-4.1/src/parallel/decompose/ptscotchDecomp/Make/options
-@@ -5,8 +5,7 @@
- $(PFLAGS) $(PINC) \
- -I$(SCOTCH_ROOT)/include \
- -I$(SCOTCH_ARCH_PATH)/include/$(FOAM_MPI) \
-- -I/usr/include/scotch \
- -I../decompositionMethods/lnInclude
-
- LIB_LIBS = \
-- -L$(SCOTCH_ROOT)/lib -L$(FOAM_EXT_LIBBIN)/$(FOAM_MPI) -lptscotch -lptscotcherrexit -lscotch ${LINK_FLAGS} -lrt
-+ -L$(SCOTCH_ROOT)/lib -L$(MPI_ARCH_PATH)/lib -lptscotch -lptscotcherrexit -lscotch ${LINK_FLAGS} -lrt
-diff -ur OpenFOAM-4.x-version-4.1.org/src/parallel/decompose/scotchDecomp/Make/options OpenFOAM-4.x-version-4.1/src/parallel/decompose/scotchDecomp/Make/options
---- OpenFOAM-4.x-version-4.1.org/src/parallel/decompose/scotchDecomp/Make/options
-+++ OpenFOAM-4.x-version-4.1/src/parallel/decompose/scotchDecomp/Make/options
-@@ -9,8 +9,7 @@
- $(PFLAGS) $(PINC) \
- -I$(SCOTCH_ROOT)/include \
- -I$(SCOTCH_ARCH_PATH)/include \
-- -I/usr/include/scotch \
- -I../decompositionMethods/lnInclude
-
- LIB_LIBS = \
-- -L$(SCOTCH_ROOT)/lib -L$(FOAM_EXT_LIBBIN) -lscotch -lscotcherrexit -lrt
-+ -L$(SCOTCH_ROOT)/lib -lscotch -lscotcherrexit -lrt
-diff -ur OpenFOAM-4.x-version-4.1.org/wmake/makefiles/general OpenFOAM-4.x-version-4.1/wmake/makefiles/general
---- OpenFOAM-4.x-version-4.1.org/wmake/makefiles/general
-+++ OpenFOAM-4.x-version-4.1/wmake/makefiles/general
-@@ -33,7 +33,6 @@
- # The Makefile uses a POSIX shell
- #------------------------------------------------------------------------------
-
--SHELL = /bin/sh
-
-
- #------------------------------------------------------------------------------
-diff -ur OpenFOAM-4.x-version-4.1.org/wmake/wmake OpenFOAM-4.x-version-4.1/wmake/wmake
---- OpenFOAM-4.x-version-4.1.org/wmake/wmake
-+++ OpenFOAM-4.x-version-4.1/wmake/wmake
-@@ -163,7 +163,7 @@
- then
- if [ "$WM_NCOMPPROCS" -gt 1 -a ! "$MAKEFLAGS" ]
- then
-- lockDir=$HOME/.$WM_PROJECT/.wmake
-+ lockDir=$(cd $(dirname $BASH_SOURCE)/../.. && pwd -P)/.$WM_PROJECT/.wmake
-
- if [ -d $lockDir ]
- then
-diff -ur OpenFOAM-4.x-version-4.1.org/wmake/wmakeScheduler OpenFOAM-4.x-version-4.1/wmake/wmakeScheduler
---- OpenFOAM-4.x-version-4.1.org/wmake/wmakeScheduler
-+++ OpenFOAM-4.x-version-4.1/wmake/wmakeScheduler
-@@ -53,7 +53,7 @@
- # csh sets HOST, bash sets HOSTNAME
- : ${HOST:=$HOSTNAME}
-
--lockDir=$HOME/.$WM_PROJECT/.wmake
-+lockDir=$(cd $(dirname $BASH_SOURCE)/../.. && pwd -P)/.$WM_PROJECT/.wmake
-
- # Fallback - 1 core on current host
- : ${WM_HOSTS:=$HOST:1}
-diff -ur OpenFOAM-4.x-version-4.1.org/wmake/wmakeSchedulerUptime OpenFOAM-4.x-version-4.1/wmake/wmakeSchedulerUptime
---- OpenFOAM-4.x-version-4.1.org/wmake/wmakeSchedulerUptime
-+++ OpenFOAM-4.x-version-4.1/wmake/wmakeSchedulerUptime
-@@ -53,7 +53,7 @@
- # csh sets HOST, bash sets HOSTNAME
- : ${HOST:=$HOSTNAME}
-
--lockDir=$HOME/.$WM_PROJECT/.wmake
-+lockDir=$(cd $(dirname $BASH_SOURCE)/../.. && pwd -P)/.$WM_PROJECT/.wmake
- # Fallback - 1 core on current host
- : ${WM_HOSTS:=$HOST:1}
-
-diff -ur OpenFOAM-4.x-version-4.1.org/src/parallel/decompose/metisDecomp/metisDecomp.C OpenFOAM-4.x-version-4.1/src/parallel/decompose/metisDecomp/metisDecomp.C
---- OpenFOAM-4.x-version-4.1.org/src/parallel/decompose/metisDecomp/metisDecomp.C
-+++ OpenFOAM-4.x-version-4.1/src/parallel/decompose/metisDecomp/metisDecomp.C
-@@ -67,7 +67,7 @@
-
- // Processor weights initialised with no size, only used if specified in
- // a file
-- Field<scalar> processorWeights;
-+ Field<floatScalar> processorWeights;
-
- // Cell weights (so on the vertices of the dual)
- List<label> cellWeights;
-diff -ur OpenFOAM-4.x-version-4.1.org/wmake/rules/General/CGAL OpenFOAM-4.x-version-4.1/wmake/rules/General/CGAL
---- OpenFOAM-4.x-version-4.1.org/wmake/rules/General/CGAL
-+++ OpenFOAM-4.x-version-4.1/wmake/rules/General/CGAL
-@@ -6,9 +6,10 @@
- -I/usr/include
-
- CGAL_LIBS = \
-- -L$(MPFR_ARCH_PATH)/lib$(WM_COMPILER_LIB_ARCH) \
-- -L$(GMP_ARCH_PATH)/lib$(WM_COMPILER_LIB_ARCH) \
-+ -L$(MPFR_ARCH_PATH)/lib \
-+ -L$(GMP_ARCH_PATH)/lib \
- -L$(BOOST_ARCH_PATH)/lib \
- -L$(CGAL_ARCH_PATH)/lib \
- -lCGAL \
-+ -lgmp \
- -lmpfr
-diff -ur OpenFOAM-4.x-version-4.1.org/wmake/rules/linux64Gcc/c++ OpenFOAM-4.x-version-4.1/wmake/rules/linux64Gcc/c++
---- OpenFOAM-4.x-version-4.1.org/wmake/rules/linux64Gcc/c++
-+++ OpenFOAM-4.x-version-4.1/wmake/rules/linux64Gcc/c++
-@@ -20,5 +20,5 @@
-
- LINK_LIBS = $(c++DBUG)
-
--LINKLIBSO = $(CC) $(c++FLAGS) -shared -Xlinker --add-needed -Xlinker --no-as-needed
--LINKEXE = $(CC) $(c++FLAGS) -Xlinker --add-needed -Xlinker --no-as-needed
-+LINKLIBSO = $(CC) $(c++FLAGS) $(LDFLAGS) -shared -Xlinker --add-needed -Xlinker --no-as-needed
-+LINKEXE = $(CC) $(c++FLAGS) $(LDFLAGS) -Xlinker --add-needed -Xlinker --no-as-needed
@@ -3,6 +3,7 @@
;;; Copyright © 2021, 2022 Maxim Cournoyer <maxim.cournoyer@gmail.com>
;;; Copyright © 2022 Eric Bavier <bavier@posteo.net>
;;; Copyright © 2022 Liliana Marie Prikler <liliana.prikler@gmail.com>
+;;; Copyright © 2023 Reza Housseini <reza@housseini.me>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -31,6 +32,7 @@ (define-module (gnu packages simulation)
#:use-module (gnu packages cmake)
#:use-module (gnu packages compression)
#:use-module (gnu packages cpp)
+ #:use-module (gnu packages engineering)
#:use-module (gnu packages flex)
#:use-module (gnu packages fontutils)
#:use-module (gnu packages gettext)
@@ -41,22 +43,29 @@ (define-module (gnu packages simulation)
#:use-module (gnu packages gtk)
#:use-module (gnu packages image)
#:use-module (gnu packages iso-codes)
+ #:use-module (gnu packages image-processing)
#:use-module (gnu packages linux)
#:use-module (gnu packages m4)
#:use-module (gnu packages maths)
#:use-module (gnu packages mpi)
#:use-module (gnu packages multiprecision)
#:use-module (gnu packages ncurses)
+ #:use-module (gnu packages pdf)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages protobuf)
#:use-module (gnu packages python)
#:use-module (gnu packages python-build)
#:use-module (gnu packages python-science)
#:use-module (gnu packages python-xyz)
+ #:use-module (gnu packages qt)
#:use-module (gnu packages readline)
+ #:use-module (gnu packages serialization)
+ #:use-module (gnu packages ssh)
+ #:use-module (gnu packages textutils)
#:use-module (gnu packages tls)
#:use-module (gnu packages version-control)
#:use-module (gnu packages video)
+ #:use-module (gnu packages xiph)
#:use-module (gnu packages xml)
#:use-module (gnu packages xorg)
#:use-module (guix download)
@@ -75,175 +84,291 @@ (define-module (gnu packages simulation)
#:use-module (ice-9 regex)
#:use-module (srfi srfi-1))
+;; replaced by packages openfoam-org and openfoam-com
(define-public openfoam
+ (deprecated-package "openfoam" openfoam-org))
+
+(define-public openfoam-org
(package
- (name "openfoam")
- (version "4.1")
- (source
- (origin
- (method url-fetch)
- (uri (string-append
- "http://dl.openfoam.org/source/"
- (string-map (lambda (x) (if (eq? x #\.) #\- x)) version)))
- (file-name (string-append name "-" version ".tar.gz"))
- (sha256
- (base32 "0cgxh4h2hf50qbvvdg5miwc2nympb0nrv3md96vb3gbs9vk8vq9d"))
- (patches (search-patches "openfoam-4.1-cleanup.patch"))
- (modules '((guix build utils)))
- (snippet
- '(begin
- ;; Include <sys/sysmacros.h>, which is where glibc >= 2.28 provides
- ;; 'major' and 'minor'.
- (substitute* "src/OSspecific/POSIX/fileStat.C"
- (("#include <unistd\\.h>")
- "#include <unistd.h>\n#include <sys/sysmacros.h>\n"))
- #t))))
+ (name "openfoam-org")
+ (version "10.20221128")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append "https://github.com/OpenFOAM/OpenFOAM-"
+ (version-major version) "/archive/"
+ (second (string-split version #\.))
+ ".tar.gz"))
+ (sha256
+ (base32
+ "0yd924nhck4jh9gf1wrdnk8svj38yicg4803q79nnjqhn6lcq8c5"))
+ (modules '((guix build utils)))
+ (snippet '(begin
+ ;; patch shell paths
+ (substitute* (list "wmake/src/Makefile"
+ "wmake/makefiles/general")
+ (("/bin/sh")
+ which "sh"))
+ (substitute* "etc/bashrc"
+ ;; only go back one folder level
+ (("\\$\\(dirname \\$\\{BASH_SOURCE:-\\$0\\}\\)/../..")
+ "$(dirname ${BASH_SOURCE:-$0})/..")
+ ;; do not use openfoam folder convention
+ (("^export WM_PROJECT_DIR=.*$")
+ (string-append
+ "export WM_PROJECT_DIR=$WM_PROJECT_INST_DIR\n"))
+ ;; do not source bash_completion (gives error)
+ (("^.*bash_completion.*$" all)
+ (string-append "#" all)))
+ ;; add expand flag to RunFunctions
+ (substitute* "bin/tools/RunFunctions"
+ (("foamDictionary (.*)" all args)
+ (string-append "foamDictionary -expand " args)))))))
(build-system gnu-build-system)
- (inputs
- `(("boost" ,boost)
- ("cgal" ,cgal)
- ("flex" ,flex)
- ("git" ,git)
- ("gmp" ,gmp)
- ("libxt" ,libxt)
- ("metis" ,metis)
- ("mpfr" ,mpfr)
- ("ncurses" ,ncurses)
- ("readline" ,readline)
- ("scotch" ,pt-scotch32)
- ("zlib" ,zlib)))
- (native-inputs
- (list bison))
- (propagated-inputs
- (list gzip gnuplot openmpi))
- (outputs '("debug" ;~60MB
+ (inputs (list boost
+ cgal
+ git
+ gmp
+ libxt
+ metis
+ mpfr
+ ncurses
+ readline
+ pt-scotch32
+ zlib
+ openmpi
+ paraview-5.9
+ openssh))
+ (native-inputs (list bison
+ flex
+ ;; paraview plugin dependencies
+ cmake-minimal
+ vtk
+ libxml2
+ libogg
+ libtheora
+ ffmpeg
+ gl2ps
+ libpng
+ libharu
+ jsoncpp
+ netcdf
+ hdf5
+ gdal
+ libx11
+ qtbase-5
+ eigen
+ glew
+ python
+ expat
+ xz
+ utfcpp
+ lz4
+ double-conversion
+ libjpeg-turbo
+ libtiff
+ freetype
+ pugixml
+ cgns
+ qtsvg-5
+ qttools-5
+ protobuf
+ qtxmlpatterns))
+ (propagated-inputs (list gnuplot))
+ (outputs '("debug" ;~60MB
"out"))
(arguments
`( ;; Executable files and shared libraries are located in the 'platforms'
;; subdirectory.
- #:strip-directories (list (string-append
- "lib/OpenFOAM-" ,version
- "/platforms/linux64GccDPInt32Opt/bin")
- (string-append
- "lib/OpenFOAM-" ,version
- "/platforms/linux64GccDPInt32Opt/lib"))
- #:tests? #f ; no tests to run
+ #:strip-directories (list (string-append "share/OpenFOAM-"
+ ,version
+ "/platforms/linux64GccDPInt32Opt/bin")
+ (string-append "share/OpenFOAM-"
+ ,version
+ "/platforms/linux64GccDPInt32Opt/lib"))
#:modules ((ice-9 ftw)
(ice-9 regex)
+ (ice-9 string-fun)
+ (srfi srfi-1)
(guix build gnu-build-system)
(guix build utils))
#:phases (modify-phases %standard-phases
- (add-after 'unpack 'rename-build-directory
+ (add-after 'unpack 'set-same-version-as-guix
(lambda _
- (chdir "..")
- ;; Use 'OpenFOAM-version' convention to match the file
- ;; name expectations in the build phase.
- (let ((unpack-dir (string-append
- (getcwd) "/"
- (list-ref (scandir (getcwd) (lambda (name)
- (string-match "^OpenFOAM" name))) 0)))
- (build-dir (string-append
- (getcwd) "/OpenFOAM-" ,version)))
- (rename-file unpack-dir build-dir) ; rename build directory
- (chdir (basename build-dir))) ; move to build directory
- #t))
- (delete 'configure) ; no configure phase
- (replace 'build
+ (substitute* "etc/bashrc"
+ (("^export WM_PROJECT_VERSION=.*$")
+ (string-append "export WM_PROJECT_VERSION="
+ ,version "\n"))) #t))
+ (add-before 'build 'patch-HOME-path
(lambda _
- (let ((libraries '("boost" "cgal" "gmp" "metis" "mpfr" "scotch")))
- ;; set variables to define store paths
- (for-each (lambda (library)
- (setenv (string-append
- (string-upcase library) "_ROOT")
- (assoc-ref %build-inputs library))) libraries))
- ;; set variables to define package versions
- (setenv "SCOTCHVERSION" ,(package-version scotch))
- (setenv "METISVERSION" ,(package-version metis))
- ;; set variable to pass extra 'rpath' arguments to linker
- (setenv "LDFLAGS"
- (string-append
- "-Wl,"
- "-rpath=" %output "/lib/OpenFOAM-" ,version
- "/platforms/linux64GccDPInt32Opt/lib,"
- "-rpath=" %output "/lib/OpenFOAM-" ,version
- "/platforms/linux64GccDPInt32Opt/lib/dummy"))
- ;; compile OpenFOAM libraries and applications
- (zero? (system (format #f
- "source ./etc/bashrc && ./Allwmake -j~a"
- (parallel-job-count))))))
- (add-after 'build 'update-configuration-files
+ (setenv "HOME" "/tmp") #t))
+ (add-before 'build 'patch-scotch
(lambda _
- ;; record store paths and package versions in
- ;; configuration files
- (substitute* "etc/config.sh/CGAL"
- (("$BOOST_ROOT") (getenv "BOOST_ROOT")))
- (substitute* "etc/config.sh/CGAL"
- (("$CGAL_ROOT") (getenv "CGAL_ROOT")))
- (substitute* "etc/config.sh/metis"
- (("$METIS_ROOT") (getenv "METIS_ROOT")))
- (substitute* "etc/config.sh/metis"
- (("$METISVERSION") (getenv "METISVERSION")))
- (substitute* "etc/config.sh/scotch"
- (("$SCOTCH_ROOT") (getenv "SCOTCH_ROOT")))
(substitute* "etc/config.sh/scotch"
- (("$SCOTCHVERSION") (getenv "SCOTCHVERSION")))
- (substitute* "etc/config.sh/settings"
- (("$GMP_ROOT") (getenv "GMP_ROOT")))
- (substitute* "etc/config.sh/settings"
- (("$MPFR_ROOT") (getenv "MPFR_ROOT")))
- ;; reset lockDir variable to refer to write-enabled
- ;; directory
- (substitute* "wmake/wmake"
- ((" lockDir=.*$")
- " lockDir=$HOME/.$WM_PROJECT/.wmake\n"))
- (substitute* "wmake/wmakeScheduler"
- (("lockDir=.*$")
- "lockDir=$HOME/.$WM_PROJECT/.wmake\n"))
- (substitute* "wmake/wmakeSchedulerUptime"
- (("lockDir=.*$")
- "lockDir=$HOME/.$WM_PROJECT/.wmake\n"))
- #t))
+ (("^export SCOTCH_VERSION=scotch_.*$")
+ (string-append "export SCOTCH_VERSION=scotch_"
+ ,(package-version pt-scotch32) "\n"))
+ (("^export SCOTCH_ARCH_PATH=.*$")
+ (string-append "export SCOTCH_ARCH_PATH="
+ (assoc-ref %build-inputs "pt-scotch32")
+ "\n"))) #t))
+ (add-before 'build 'patch-mpi
+ (lambda _
+ (let* ((mpi-path (assoc-ref %build-inputs "openmpi"))
+ (mpi-version ,(package-version openmpi)))
+ ;; specify openmpi type
+ (substitute* "etc/bashrc"
+ (("WM_MPLIB=SYSTEMOPENMPI")
+ "WM_MPLIB=OPENMPI"))
+ (substitute* "etc/config.sh/mpi"
+ (("export FOAM_MPI=openmpi-.*$")
+ (string-append "export FOAM_MPI=openmpi-"
+ mpi-version "\n"))
+ (("export MPI_ARCH_PATH=.*\\$FOAM_MPI.*$")
+ (string-append "export MPI_ARCH_PATH=" mpi-path
+ "\n")))) #t))
+ (add-before 'build 'patch-paraview
+ (lambda _
+ (substitute* "etc/config.sh/paraview"
+ (("^export ParaView_VERSION=.*$")
+ (string-append "export ParaView_VERSION="
+ ,(package-version paraview-5.9) "\n"))
+ (("^export ParaView_DIR=.*$")
+ (string-append "export ParaView_DIR="
+ (assoc-ref %build-inputs "paraview")
+ "\n"))) #t))
+ (add-before 'build 'add-rpaths
+ (lambda _
+ (letrec* ((libraries '("boost" "cgal"
+ "gmp"
+ "metis"
+ "mpfr"
+ "pt-scotch32"
+ "openmpi"
+ "zlib"
+ "paraview"))
+ (rpaths
+ (fold-right (lambda (library rpaths)
+ (string-append rpaths
+ "-rpath="
+ (assoc-ref
+ %build-inputs library)
+ "/lib,")) "" libraries))
+ (openfoam-lib
+ (string-append %output
+ "/share/OpenFOAM-"
+ ,version
+ "/platforms/linux64GccDPInt32Opt/lib"))
+ (ldflags
+ (string-append "-Wl,"
+ rpaths
+ "-rpath="
+ openfoam-lib
+ ","
+ "-rpath="
+ openfoam-lib
+ "/dummy,"
+ "-rpath="
+ openfoam-lib
+ "/paraview-"
+ ,(version-major+minor (package-version
+ paraview-5.9)))))
+ (substitute* "wmake/rules/linux64Gcc/c++"
+ (("\\$\\(LIB_HEADER_DIRS\\) -fPIC" all)
+ (string-append all " " ldflags)))) #t))
+ (delete 'configure) ;no configure phase
+ (replace 'build
+ (lambda _
+ ;; compile OpenFOAM libraries and applications
+ (invoke "bash" "-c"
+ (format #f
+ "source ./etc/bashrc && ./Allwmake -j~a"
+ (parallel-job-count)))))
(add-after 'build 'cleanup
- ;; Avoid unncessary, voluminous object and dep files.
+ ;; Avoid unnecessary, voluminous object and dep files.
(lambda _
- (delete-file-recursively
- "platforms/linux64GccDPInt32Opt/src")
- (delete-file-recursively
- "platforms/linux64GccDPInt32OptSYSTEMOPENMPI")
- (for-each delete-file (find-files "." "\\.o$"))
- #t))
+ (when (file-exists? "platforms/linux64GccDPInt32Opt/src")
+ (delete-file-recursively
+ "platforms/linux64GccDPInt32Opt/src"))
+ (when (file-exists?
+ "platforms/linux64GccDPInt32OptOPENMPI")
+ (delete-file-recursively
+ "platforms/linux64GccDPInt32OptOPENMPI"))
+ (for-each delete-file
+ (find-files "." "\\.o$")) #t))
+ (replace 'check
+ (lambda* (#:key tests? #:allow-other-keys)
+ (when tests?
+ (when (file-exists? "test")
+ (with-directory-excursion "test"
+ (invoke "bash" "-c"
+ (format #f
+ "source ../etc/bashrc && ./Allrun -j~a"
+ (parallel-job-count)))))
+ ;; too many tutorials are failing
+ ;; (with-directory-excursion "tutorials"
+ ;; (invoke "bash" "-c" "source ../etc/bashrc && ./Alltest"))
+ ) #t))
(replace 'install
(lambda _
;; use 'OpenFOAM-version' convention
- (let ((install-dir (string-append
- %output "/lib/OpenFOAM-" ,version)))
- (mkdir-p install-dir) ; create install directory
+ (let ((install-dir (string-append %output
+ "/share/OpenFOAM-"
+ ,version)))
+ (mkdir-p install-dir) ;create install directory
;; move contents of build directory to install directory
(copy-recursively "." install-dir))))
(add-after 'install 'add-symbolic-link
(lambda _
- ;; add symbolic link for standard 'bin' directory
- (symlink
- (string-append "./lib/OpenFOAM-" ,version
- "/platforms/linux64GccDPInt32Opt/bin")
- (string-append %output "/bin"))
- #t)))))
+ (let* ((bin (string-append %output "/bin"))
+ (lib (string-append %output "/lib"))
+ (openfoam (string-append %output
+ "/share/OpenFOAM-"
+ ,version))
+ (build-bin (string-append openfoam
+ "/platforms/linux64GccDPInt32Opt/bin"))
+ (build-lib (string-append openfoam
+ "/platforms/linux64GccDPInt32Opt/lib"))
+ (foam-bin (string-append openfoam "/bin")))
+ ;; add symbolic links in standard 'bin' directory
+ (mkdir-p bin)
+ (for-each (lambda (file)
+ (unless (member file
+ '("." ".."))
+ (symlink (string-append build-bin "/"
+ file)
+ (string-append bin "/" file))))
+ (scandir build-bin))
+ (for-each (lambda (file)
+ (unless (member file
+ '("." ".."))
+ (symlink (string-append foam-bin "/"
+ file)
+ (string-append bin "/" file))))
+ (scandir foam-bin))
+ ;; add symbolic link for standard 'lib' directory
+ (symlink build-lib lib)) #t)))))
+ (native-search-paths
+ (list (search-path-specification
+ (variable "WM_PROJECT_DIR")
+ (separator #f)
+ (files '("")))))
;; Note:
- ;; Tutorial files are installed read-only in /gnu/store.
- ;; To allow write permissions on files copied from the store a
- ;; 'chmod' step is needed before running the applications. For
- ;; example, from a user's login:
- ;; $ source $GUIX_PROFILE/lib/OpenFOAM-4.1/etc/bashrc
- ;; $ mkdir -p $FOAM_RUN
- ;; $ cd $FOAM_RUN
- ;; $ cp -r $FOAM_TUTORIALS/incompressible/simpleFoam/pitzDaily .
- ;; $ cd pitzDaily
- ;; $ chmod -R u+w .
- ;; $ blockMesh
+ ;; Tutorial files are installed read-only in /gnu/store.
+ ;; To allow write permissions on files copied from the store a
+ ;; 'chmod' step is needed before running the applications. For
+ ;; example, from a user's login:
+ ;; $ source $(dirname $(which blockMesh))/../../../etc/bashrc
+ ;; $ mkdir -p $FOAM_RUN
+ ;; $ cd $FOAM_RUN
+ ;; $ cp -r $FOAM_TUTORIALS/incompressible/simpleFoam/pitzDaily .
+ ;; $ cd pitzDaily
+ ;; $ chmod -R u+w .
+ ;; $ blockMesh
(synopsis "Framework for numerical simulation of fluid flow")
- (description "OpenFOAM provides a set of solvers and methods for tackling
+ (description
+ "OpenFOAM provides a set of solvers and methods for tackling
problems in the field of Computational Fluid Dynamics (CFD). It is written in
C++. Governing equations such as the Navier-Stokes equations can be solved in
integral form. Physical processes such as phase change, droplet transport and