From patchwork Mon Mar 11 18:11:18 2024 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Arun Isaac X-Patchwork-Id: 2360 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 3124327BBEA; Mon, 11 Mar 2024 18:12:45 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=ham autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 08BA827BBE2 for ; Mon, 11 Mar 2024 18:12:39 +0000 (GMT) Received: from localhost ([::1] helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1rjk8V-0002IC-8N; Mon, 11 Mar 2024 14:12:31 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1rjk8S-0002F7-O3 for guix-patches@gnu.org; Mon, 11 Mar 2024 14:12:28 -0400 Received: from debbugs.gnu.org ([2001:470:142:5::43]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1rjk8S-0005Ij-G1 for guix-patches@gnu.org; Mon, 11 Mar 2024 14:12:28 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1rjk90-0000wr-Dz for guix-patches@gnu.org; Mon, 11 Mar 2024 14:13:02 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#69736] [PATCH 0/7] Add toil Resent-From: Arun Isaac Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 11 Mar 2024 18:13:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 69736 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 69736@debbugs.gnu.org Cc: Arun Isaac X-Debbugs-Original-To: guix-patches@gnu.org Received: via spool by submit@debbugs.gnu.org id=B.17101807443586 (code B ref -1); Mon, 11 Mar 2024 18:13:02 +0000 Received: (at submit) by debbugs.gnu.org; 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bh=JizUg2PTHzKguqbdRXiFFMylA1YhcnQByy/5VlEDi0Q=; b=AYdeZqF1wCjOz3DD2RZG4QMOfN tQ5W5VT9NwPmeXtIKhUUAiNuyFCwgnj6mH0PgPPdWBDHuDMPWyr3GyhWRA0rmzVbeMx2pfvNihRog etdt8v4LKIg5fZZm8/bD9xMpB1NphaFsC7Zdmwa23LBQR2chp5lT3+/6y3PatE2K5smGYWsTeEZ7E pbTQKtVIdhKdbbNtMvh44YqvAtZYyL33zSOhTFLzFdsDNPmVoRKpehqNZgeQjKMWxwbTB+qXWmOaZ IUArhflLzzO8mQ1DTlZ1B51EohzyfG5hnlUMuT/LeQabkJxxSvt3xcktXeGc7LkNau/d9lSRY1Qus uZaVndTw==; Received: from [192.168.2.1] (port=57298 helo=localhost.localdomain) by systemreboot.net with esmtpsa (TLS1.3) tls TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384 (Exim 4.96.1) (envelope-from ) id 1rjk5r-0007VG-0r; Mon, 11 Mar 2024 18:09:47 +0000 From: Arun Isaac Date: Mon, 11 Mar 2024 18:11:18 +0000 Message-ID: X-Mailer: git-send-email 2.41.0 MIME-Version: 1.0 Received-SPF: pass client-ip=139.59.75.54; envelope-from=arunisaac@systemreboot.net; helo=mugam.systemreboot.net X-Spam_score_int: -20 X-Spam_score: -2.1 X-Spam_bar: -- X-Spam_report: (-2.1 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, SPF_HELO_NONE=0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org X-getmail-retrieved-from-mailbox: Patches This patchset adds toil. The linter warns that there is a collision between different versions of python-pyparsing. However, it is not possible to avoid that collision without upgrading python-pyparsing. And, the python-pyparsing upgrade is very complex. It requires rebuilding the world. It also introduces a dependency cycle since the latest version of python-pyparsing switches to the pyproject-build-system. Arun Isaac (7): gnu: Add python-typing-extensions-4.10. gnu: Add python-pypubsub. gnu: Add python-addict. gnu: Add python-prefixed. gnu: Add python-enlighten. gnu: Add python-cwltool. gnu: Add python-toil. gnu/packages/bioinformatics.scm | 74 +++++++++++++++++++++++++++++ gnu/packages/python-build.scm | 13 ++++++ gnu/packages/python-xyz.scm | 83 +++++++++++++++++++++++++++++++++ 3 files changed, 170 insertions(+) base-commit: 001dfb89579856b8695b33b59f484f36e313347f