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[bug#67915,00/32] gnu: Astronomy 2023/12 updates.

Message ID cover.1703031693.git.sharlatanus@gmail.com
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Series gnu: Astronomy 2023/12 updates. | expand

Message

Sharlatan Hellseher Dec. 20, 2023, 12:29 a.m. UTC
Hi Guix,

Soon is New Year and here is a fresh portion of updated and improved packages
from (gnu packages astronomy) for every stars lovers!

As previous patch series this one is tested on x86_64-linux system and does
not introduce any regressions.

> ./pre-inst-env guix build --rounds=2 aocommon aoflagger calceph cfitsio
  julia-fitsio libpasastro phd2 python-asdf-astropy python-astropy-healpix
  python-crds python-drizzle python-drms python-gwcs python-jplephem
  python-mpl-animators python-photutils python-pynbody python-radio-beam
  python-regions python-reproject python-spectral-cube python-spherical-geometry
  python-stdatamodels python-stsci-imagestats python-stsynphot python-synphot
  python-tweakwcs splash wcslib

/gnu/store/zr4h10lk2ihd6wmzn8225r6mjiq2gy7r-wcslib-8.2.2
/gnu/store/2ah3m2v02qgcnz3i0wc0r2rpmkwdd4gm-splash-3.10.1
/gnu/store/l8n4217asmp349z69kfr00ivjr4k3nbh-python-tweakwcs-0.8.5
/gnu/store/2fzip0dwynah0ywvi096wdyi3q99lww5-python-synphot-1.3.0
/gnu/store/52biygnkphr7j5a2pjrlml06kabpc6l2-python-stsynphot-1.3.0
/gnu/store/ffdznkk0k310h4gdqa3cnbk93bsz7q95-python-stsci-imagestats-1.8.0
/gnu/store/4m9n3zl6vlynm8wjfqr96aqpbpxy3y6g-python-stdatamodels-1.9.0
/gnu/store/63y7rrjsswfj9njm495j7xpz4yq86ndj-python-spherical-geometry-1.3.1
/gnu/store/zccgc9xaxa7mm0wzv0668m76q1g86cv5-python-spectral-cube-0.6.5
/gnu/store/ngyhr87qyi8zqym96z8hl5k025diwnr6-python-reproject-0.13.0
/gnu/store/fix540lccrv7c23w35yf7d0wi2yhgvv1-python-regions-0.8
/gnu/store/iy68s6zdvq3pam9ybn13g3wnsirjmc71-python-radio-beam-0.3.7
/gnu/store/fk0y1vqkwnmdkz8bafkk838g58xsaq4c-python-pynbody-1.5.2
/gnu/store/dhcfz0171jg82v6zh8v8q139prxbqg60-python-photutils-1.10.0
/gnu/store/yypha5a38f5i9vd03nic9884shcg3kkg-python-mpl-animators-1.1.1
/gnu/store/m34dd6cykr9gbd1zf4ldv196gnkycd24-python-jplephem-2.21
/gnu/store/i4y4p2rf0b0q9i70i59pf8m67fd81hj0-python-gwcs-0.20.0
/gnu/store/4hddwqbkrads0l8j3al1pdsbwqwpbyd6-python-drms-0.7.0
/gnu/store/6ry0dg8nbi0wgfz9d1jcymyxkj18p28a-python-drizzle-1.14.4
/gnu/store/w29hp5wkslpliz7wgbh6dzv4igwy0cvs-python-crds-11.17.13
/gnu/store/48yxldyxzal37nrdlgszrkw2f2i8pgbf-python-astropy-healpix-1.0.2
/gnu/store/5a9g7i7cw3ljw0jbjc69giywzf43v79r-python-asdf-astropy-0.5.0
/gnu/store/p1psb256vvpl6v323gdba5x50rccx6d6-phd2-2.6.12
/gnu/store/lsh4hiya5z84y0cw2l67bhg8mpfp4rz5-libpasastro-1.4.2
/gnu/store/gy4l5jhj7fm212ymdxb0h5fswmvkp3bq-julia-fitsio-0.17.1
/gnu/store/jj344l6cxqnkdxg5fdzdf0qkfqvgpifw-cfitsio-4.3.1
/gnu/store/az5mgwk016fcf8lc1w2lrld9l8f8sckc-calceph-3.5.4
/gnu/store/s5nfnz3qcyxqrbn1nwx1ds5y0d82a7g2-aoflagger-3.4.0
/gnu/store/jjipsfd9x1p81wmrfb2qlz8sigy2pzm2-aocommon-0.0.0-2.9272ea3

Building the following 24 packages would ensure 76 dependent packages are
rebuilt: swarp@2.41.5 imppg@0.6.5 splash@3.10.1 sextractor@2.28.0
stellarium@23.3 indi@2.0.4 python-fitsio@1.2.1 phd2@2.6.12 siril@1.2.0
glnemo2@1.21.0 julia-wcs@0.6.2 alfa@2.2 julia-fitsio@0.17.1 gwenview@23.04.3
labplot@2.9.0 gnuastro@0.21 aoflagger@3.4.0 python-asdf@3.0.1 python-sunpy@5.0.1
python-spectral-cube@0.6.5 python-poliastro@0.17.0 python-astroalign@2.5.1
python-jwst@1.12.5 python-tslearn@0.6.2

> ./pre-inst-env guix build swarp@2.41.5 imppg@0.6.5 splash@3.10.1
  sextractor@2.28.0 stellarium@23.3 indi@2.0.4 python-fitsio@1.2.1 phd2@2.6.12
  siril@1.2.0 glnemo2@1.21.0 julia-wcs@0.6.2 alfa@2.2 julia-fitsio@0.17.1
  gwenview@23.04.3 labplot@2.9.0 gnuastro@0.21 aoflagger@3.4.0 python-asdf@3.0.1
  python-sunpy@5.0.1 python-spectral-cube@0.6.5 python-poliastro@0.17.0
  python-astroalign@2.5.1 python-jwst@1.12.5 python-tslearn@0.6.2

/gnu/store/w2hkmxp0qmw16wqhckfv3y93h1v7g3wx-python-tslearn-0.6.2
/gnu/store/041g35xfdbx8igdl0f0q129xp355n83z-python-jwst-1.12.5
/gnu/store/s9q6950nq9z5f5rb69b3bxs6fm83jz8m-python-astroalign-2.5.1
/gnu/store/hy7p0nrradsz7f35vj7q89wdlifrvwmy-python-poliastro-0.17.0
/gnu/store/zccgc9xaxa7mm0wzv0668m76q1g86cv5-python-spectral-cube-0.6.5
/gnu/store/di7hrq1dl4cbhc17s3s3nanvc2c9kd8i-python-sunpy-5.0.1
/gnu/store/vz4xgia24jaf1q487k6h6l4x3ddba2m9-python-asdf-3.0.1
/gnu/store/s5nfnz3qcyxqrbn1nwx1ds5y0d82a7g2-aoflagger-3.4.0
/gnu/store/6hl6phgw0cl582b09sj5ark9jjzgy2jj-gnuastro-0.21
/gnu/store/2myp6dwkhzc9a5mllz8y1x59abcbkazk-labplot-2.9.0
/gnu/store/44dnskhpy2anzyypvp1z4r4p8zi78jcl-gwenview-23.04.3
/gnu/store/gy4l5jhj7fm212ymdxb0h5fswmvkp3bq-julia-fitsio-0.17.1
/gnu/store/kdwz6gc3972rj5xylk7wavq4ggsp98wa-alfa-2.2
/gnu/store/3xawvn9jlchjkqhndlk9ay2bqbc45ph9-julia-wcs-0.6.2
/gnu/store/99fzbzr9f5dxvmvi86h1vahilcmqr2ck-glnemo2-1.21.0
/gnu/store/dvhkxx56b5b49fbngvsvxqd3vvcs7ijm-siril-1.2.0
/gnu/store/p1psb256vvpl6v323gdba5x50rccx6d6-phd2-2.6.12
/gnu/store/cszb62wbdc99jrbf95x1qqjg9b8zlshk-python-fitsio-1.2.1
/gnu/store/lfagykzkh8sh907bqkmb69g12hyz5l2b-indi-2.0.4
/gnu/store/3wkp5pg5r31nlf6hn5ymadqrjzhb5a6i-stellarium-23.3
/gnu/store/1wag8n77fr29k6yymf0c6maxsrzcy9hm-sextractor-2.28.0
/gnu/store/2ah3m2v02qgcnz3i0wc0r2rpmkwdd4gm-splash-3.10.1
/gnu/store/ww538kn0a78qzy49jl71splmbf2i6bbv-imppg-0.6.5
/gnu/store/ghr9v98gziadwrk02xzgviidj6k76fjc-swarp-2.41.5

Sharlatan Hellseher (32):
  gnu: aocommon: Update to 0.0.0-2.9272ea3.
  gnu: aoflagger: Update to 3.4.0.
  gnu: calceph: Update to 3.5.4.
  gnu: cfitsio: Update to 4.3.1.
  gnu: libpasastro: Update to 1.4.2.
  gnu: phd2: Update to 2.6.12.
  gnu: python-asdf-astropy: Update to 0.5.0.
  gnu: python-astropy-healpix: Update to 1.0.2.
  gnu: python-crds: Update to 11.17.13.
  gnu: python-drizzle: Update to 1.14.4.
  gnu: python-drms: Update to 0.7.0.
  gnu: python-gwcs: Update to 0.20.0.
  gnu: python-jplephem: Update to 2.21.
  gnu: python-mpl-animators: Update to 1.1.1.
  gnu: julia-fitsio: Update to 0.17.1.
  gnu: python-photutils: Update to 1.10.0.
  gnu: python-pynbody: Update to 1.5.2.
  gnu: python-radio-beam: Update to 0.3.7.
  gnu: python-regions: Update to 0.8.
  gnu: python-reproject: Update to 0.13.0.
  gnu: python-spectral-cube: Update to 0.6.5.
  gnu: python-spherical-geometry: Update to 1.3.1.
  gnu: python-stdatamodels: Update to 1.9.0.
  gnu: python-stsci-imagestats: Update to 1.8.0.
  gnu: python-stsci-imagestats: Enable tests
  gnu: python-stsynphot: Update to 1.3.0.
  gnu: python-synphot: Update to 1.3.0.
  gnu: python-synphot: Adjust package style.
  gnu: python-tweakwcs: Update to 0.8.5.
  gnu: splash: Update to 3.10.1.
  gnu: wcslib: Update to 8.2.2.
  gnu: python-regions: Use G-expressions.

 gnu/packages/astronomy.scm | 211 +++++++++++++++++++++----------------
 gnu/packages/julia-xyz.scm |   4 +-
 2 files changed, 123 insertions(+), 92 deletions(-)


base-commit: ac61e9705fb8c450c6cd0c1731fbb1b909c1f944

Comments

Sharlatan Hellseher Jan. 1, 2024, 11:58 a.m. UTC | #1
Hi Guix!

Happy New Year!

A gentle ping on this patch series from Dismember 2023.

I'm working on updating astropy and sunpy which requires
more packages and resolving some build issues.

Thanks,
Oleg
Sharlatan Hellseher Jan. 9, 2024, 6:20 p.m. UTC | #2
Hi,

I would like to prepare an update for this month, please let me know if the
patch series needs any adjustment.

Thanks,
Oleg

On Mon, 1 Jan 2024, 11:58 Sharlatan Hellseher, <sharlatanus@gmail.com>
wrote:

> Hi Guix!
>
> Happy New Year!
>
> A gentle ping on this patch series from Dismember 2023.
>
> I'm working on updating astropy and sunpy which requires
> more packages and resolving some build issues.
>
> Thanks,
> Oleg
>
Ricardo Wurmus Jan. 10, 2024, 9:28 a.m. UTC | #3
Hi,

thank you for your patience!

> I would like to prepare an update for this month, please let me know
> if the patch series needs any adjustment.

This patch series looks pretty good to me, thank you!

Note that I have been working on a few updates to Python science
packages in the wip-python-science branch.  Just in case you’d need to
add packages that are already found on that branch.

Please ping me when you have your update ready and I’ll merge it ASAP.
Would be a shame to have this series delayed any further.

Thanks!
Ricardo Wurmus Jan. 11, 2024, 2:38 p.m. UTC | #4
Hi,

> I've cheery picked  commits for astronomy and applied on
> wip-python-science branch
>
> origin/wip-python-science 9fb30db770e7cb2c2b7703176791e000cfbf7e86

I’m very sorry: I recreated the branch to rebase it on master.  I didn’t
realize you would push to the branch.

If you still have a copy of your changes, could you please rebase them
and push them again?  Sorry about this.
Sharlatan Hellseher Jan. 11, 2024, 4:42 p.m. UTC | #5
Hi Ricardo,

I've cheery picked  commits for astronomy and applied on
wip-python-science branch

origin/wip-python-science 9fb30db770e7cb2c2b7703176791e000cfbf7e86

Everything is still building successfully.

If you may push #67915 patch series covering state of astronomy packages from
2023/12, and I'll start preparing updates for 2024/01 maybe after
wip-python-science is merge.

Thanks,
Oleg

./pre-inst-env guix build --rounds=2 aocommon aoflagger calceph cfitsio
julia-fitsio libpasastro phd2 python-asdf-astropy python-astropy-healpix
python-crds python-drizzle python-drms python-gwcs python-jplephem
python-mpl-animators python-photutils python-pynbody python-radio-beam
python-regions python-reproject python-spectral-cube python-spherical-geometry
python-stdatamodels python-stsci-imagestats python-stsynphot python-synphot
python-tweakwcs splash wcslib

/gnu/store/0d6iz1ia0ypx45j51cdlzr9r4gzm4nb6-wcslib-8.2.2
/gnu/store/84yss6l62sgq8n2qwlvwg8hdz0ryliw1-splash-3.10.1
/gnu/store/zpm1anw9cnzak5wx5dlbzaz496pcv2bx-python-tweakwcs-0.8.5
/gnu/store/a4jiz4b7ajwi9yzcgpn61g7plwjyb7r6-python-synphot-1.3.0
/gnu/store/332anrzidj55qanrzakckvxdbd3nyrhh-python-stsynphot-1.3.0
/gnu/store/algddr41kvg0bqabxq2sjgcx4bmiq55g-python-stsci-imagestats-1.8.0
/gnu/store/2cc02kbyww7i1znmn5017c0nv5q3lwkf-python-stdatamodels-1.9.0
/gnu/store/q83n7bpr63fgjmjnkgy85d68ydx8n7fb-python-spherical-geometry-1.3.1
/gnu/store/73cnzmdmi932hapm1rd9lajv3sbdb00r-python-spectral-cube-0.6.5
/gnu/store/3mmfxm8b391hy7gk2i3fgw8khv82vb17-python-reproject-0.13.0
/gnu/store/a9b23558skk3lwz3spq3akp76mfn9vcg-python-regions-0.8
/gnu/store/syc6x9sz181vp3mq58qspg0md29sjffs-python-radio-beam-0.3.7
/gnu/store/1dzcmwszcbbwz8d9nycflzwh3s32g1x9-python-pynbody-1.5.2
/gnu/store/m5qb63ki7ijnwjd95knwxim6rsrdd26w-python-photutils-1.10.0
/gnu/store/c8ia403dnnc5av2fh096c2zil7y73h9r-python-mpl-animators-1.1.1
/gnu/store/lwya6fz2x2s2z2p937x1yjhnjpr8p5b3-python-jplephem-2.21
/gnu/store/iyzr2qdd0v90r6f71qrz3yhqrrqlnsi4-python-gwcs-0.20.0
/gnu/store/wknw241nxav6xq4z4qx5qjm04gj677bg-python-drms-0.7.0
/gnu/store/yp3qb8779nkd0d6znmfcap5l56dvxy56-python-drizzle-1.14.4
/gnu/store/afgb6f7mc4ryyj0x70pf5fvnqnp09286-python-crds-11.17.13
/gnu/store/69kn0i4i62xrrjmz1c6kygnlzwpv8pi0-python-astropy-healpix-1.0.2
/gnu/store/a96n317jz7853w4lr9dq0m6gq15ddby7-python-asdf-astropy-0.5.0
/gnu/store/bzc2p8b07fdz318vcw1ghqwpzfx4sv9w-phd2-2.6.12
/gnu/store/lsh4hiya5z84y0cw2l67bhg8mpfp4rz5-libpasastro-1.4.2
/gnu/store/yq7ig09gm16vik0hisrlj82xsvwcd3sc-julia-fitsio-0.17.1
/gnu/store/a06x6j0ygxz2sr8phy163gp105s9g74m-cfitsio-4.3.1
/gnu/store/az5mgwk016fcf8lc1w2lrld9l8f8sckc-calceph-3.5.4
/gnu/store/2pncaqvc1nz5zzn2axih24glxvvlj86g-aoflagger-3.4.0
/gnu/store/jjipsfd9x1p81wmrfb2qlz8sigy2pzm2-aocommon-0.0.0-2.9272ea3

On Wed, 10 Jan 2024 at 09:32, Ricardo Wurmus <rekado@elephly.net> wrote:
>
>
> Hi,
>
> thank you for your patience!
>
> > I would like to prepare an update for this month, please let me know
> > if the patch series needs any adjustment.
>
> This patch series looks pretty good to me, thank you!
>
> Note that I have been working on a few updates to Python science
> packages in the wip-python-science branch.  Just in case you’d need to
> add packages that are already found on that branch.
>
> Please ping me when you have your update ready and I’ll merge it ASAP.
> Would be a shame to have this series delayed any further.
>
> Thanks!
>
> --
> Ricardo
Sharlatan Hellseher Jan. 12, 2024, 9:51 p.m. UTC | #6
Hi!

Thanks for feedback, pushing to master branch as my first proper patch series :)
Commit: bfdcf6b36578ac0567f7e06651375d74688d22e5

--
VCS: https://github.incerto.xyz/; https://git.sr.ht/~hellseher/
GPG: 9847 81DE 689C 21C2 6418 0867 76D7 27BF F62C D2B5

… наш разум - превосходная объяснительная машина которая способна
найти смысл почти в чем угодно, истолковать любой феномен, но
совершенно не в состоянии принять мысль о непредсказуемости.