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A few notes: - clipper2 was added for cura IIRC, which requires it but isn't ready yet / requires more work. - I couldn't test python-pytensor update because of build times, so it might still break. Nicolas Graves (38): gnu: Add clipper2. gnu: labelme: Add missing native-inputs. gnu: scregseg: Add missing native-inputs. gnu: autokey: Add missing native-inputs. gnu: mageck: Add missing native-inputs. gnu: python-pytroch-geometric: Skip failing tests. gnu: Add string-view-lite. gnu: python-pytensor: Update to 2.30.1. gnu: python-vaex-core: Update to 4.17.1. gnu: Remove pybind11-2.3. gnu: python-property-cached: Fix build. gnu: python-attr: Update to 0.3.2. gnu: python-serpent: Update to 1.41. gnu: python-pyro4: Update to 4.82. gnu: python-lcapy: Add missing native-inputs. gnu: python-linear-operator: Update to 0.6. gnu: gpytorch: Remove uneeded inputs. gnu: python-botorch: Add missing native-inputs. gnu: python-gpytorch: Update to 1.14. gnu: python-botorch: Update to 0.13.0. gnu: python-pgmpy: Update to 1.0.0. gnu: python-qasync: Ignore failing test. gnu: python-bed-reader: Fix build and enable tests. gnu: python-pysnptools: Fix build and enable tests. gnu: Add python-poetry-core-next. gnu: python-duniterpy: Update to 1.2.1. gnu: python-pgpy: Fix tests. gnu: python-furl: Update to 2.1.4. gnu: python-rq: Update to 2.3.1. gnu: python-crontab: Update to 3.2.0. gnu: python-stone: Update to 3.3.9. gnu: python-rq-scheduler: Update to 0.14. gnu: python-port-for: Update to 0.7.4. gnu: Remove python-cookies. gnu: python-django-rq: Update to 3.0.0. gnu: python-flask-seasurf: Update to 2.0.0. gnu: python-country-converter: Add missing native-input. gnu: python-itemloaders: Update to 1.3.2. gnu/local.mk | 3 + gnu/packages/bioinformatics.scm | 280 ++++++++++++++---- gnu/packages/cpp.scm | 56 +++- gnu/packages/databases.scm | 67 +++-- gnu/packages/django.scm | 28 +- gnu/packages/engineering.scm | 4 +- gnu/packages/finance.scm | 40 +-- gnu/packages/image-processing.scm | 3 +- gnu/packages/iso-codes.scm | 3 +- gnu/packages/machine-learning.scm | 56 ++-- .../python-bed-reader-use-store-samples.patch | 147 +++++++++ .../python-property-cached-asyncio-3_11.patch | 201 +++++++++++++ .../python-vaex-core-fix-tsl-use.patch | 67 +++++ gnu/packages/python-build.scm | 10 + gnu/packages/python-crypto.scm | 15 +- gnu/packages/python-science.scm | 87 +++--- gnu/packages/python-web.scm | 60 ++-- gnu/packages/python-xyz.scm | 186 ++++++------ gnu/packages/statistics.scm | 16 +- 19 files changed, 987 insertions(+), 342 deletions(-) create mode 100644 gnu/packages/patches/python-bed-reader-use-store-samples.patch create mode 100644 gnu/packages/patches/python-property-cached-asyncio-3_11.patch create mode 100644 gnu/packages/patches/python-vaex-core-fix-tsl-use.patch