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Nicolas Graves (26): gnu: python-zeroc-ice: Update to 3.7.10.1. gnu: python-cchardet: Update to 2.2.0a2. gnu: python-databricks-cli: Update to 0.18.0. gnu: python-jsonargparse: Update to 4.37.0. gnu: python-pyvcf: Use the fork python-pyvcf3. gnu: Remove python-parameterizedtestcase. gnu: Remove python-anyjson. gnu: python-pyquery: Update to 2.0.1. gnu: python-locust: Update to 2.33.2. gnu: rseqc: Switch to pyproject-build-system. gnu: seqmagick: Update to 0.8.6-0.dee6ab9. gnu: Remove python-pyfasta. gnu: taxtastic: Update to 0.11.1. gnu: python-rstr: Update to 3.2.2. Enable tests. gnu: reprotest: Update to 0.7.29. gnu: python-sip: Update to 6.10.0. gnu: Add python-pybktree. gnu: umi-tools: Update to 1.1.6. gnu: cpplint: Update to 2.0.0. gnu: python-patch-ng: Update to 1.18.1. gnu: veusz: Update to 3.6.2. gnu: conan: Update to 2.7.1. gnu: python-cu2qu: Fix tests. gnu: libei: Update to 1.4.0. gnu: openmolar: Fix build. gnu: python-mechanize: Update to 0.4.10. gnu/packages/backup.scm | 4 +- gnu/packages/benchmark.scm | 33 ++- gnu/packages/bioinformatics.scm | 262 +++++++----------- gnu/packages/cpp.scm | 11 +- gnu/packages/diffoscope.scm | 4 +- gnu/packages/fontutils.scm | 7 +- gnu/packages/freedesktop.scm | 19 +- gnu/packages/maths.scm | 73 ++--- gnu/packages/medical.scm | 32 ++- gnu/packages/package-management.scm | 139 +++++----- .../patches/python-sip-include-dirs.patch | 17 +- gnu/packages/python-check.scm | 19 -- gnu/packages/python-web.scm | 18 +- gnu/packages/python-xyz.scm | 159 ++++++----- gnu/packages/qt.scm | 16 +- 15 files changed, 407 insertions(+), 406 deletions(-)