mbox series

[bug#73070,0/3] Fix python development environment

Message ID 20240906142232.18550-1-ngraves@ngraves.fr
Headers show
Series Fix python development environment | expand

Message

Nicolas Graves Sept. 6, 2024, 2:20 p.m. UTC 
The python developping package twine was severely outdated and didn't
work with pypi at all. This update fixes it.

Nicolas Graves (3):
  gnu: python-readme-renderer: Update to 35.0.
  gnu: python-pkginfo: Update to 1.10.0.
  gnu: python-twine: Update to 5.1.1.

 gnu/packages/python-xyz.scm | 50 +++++++++++++++++--------------------
 1 file changed, 23 insertions(+), 27 deletions(-)

Comments

Sharlatan Hellseher Sept. 25, 2024, 11:03 p.m. UTC | #1 
Hi!

After 4h of building the chain it's finally finished with majority
packages successfully finished

Please see the stats:

--8<---------------cut here---------------start------------->8---
> git log -4 --stat
commit 36206d8c9bff95f76d1a03aa7469d52c71001ead (HEAD -> local/20240925180015-issue-73070)
Author: Nicolas Graves via Guix-patches via <guix-patches@gnu.org>
Date:   Sat Sep 21 23:47:59 2024 +0100

    gnu: python-twine: Update to 5.1.1.

    * gnu/packages/python-xyz.scm (python-twine): Update to 5.1.1.
      [build-system]: Move to pyproject-build-system.
      [arguments]<#:test-flags>: Disable failing tests.
      [native-inputs]: Add python-pretend, python-pytest, python-pytest-socket.
      [propagated-inputs]: Remove python-tqdm, python-packaging. Add
      python-imporlib-metadata, python-keyring, python-rfc3986,
      python-rich and python-urllib3.

    Reviewed-by: Steve George <steve@futurile.net>
    Change-Id: I55dbcd646dec60cfe8ec226aed0cf3f8c59e2eeb
    Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

 gnu/packages/python-xyz.scm | 34 +++++++++++++++++++++++-----------
 1 file changed, 23 insertions(+), 11 deletions(-)

commit 14c2654b2f9ea3adaa444d1a59be66724c974108
Author: Nicolas Graves via Guix-patches via <guix-patches@gnu.org>
Date:   Sat Sep 21 23:48:00 2024 +0100

    gnu: python-altair: Update to 5.3.0.

    * gnu/packages/statistics.scm (python-altair): Update to 5.3.0.
      [arguments]<#:test-flags>: Add failing tests, reorganize.

    Reviewed-by: Steve George <steve@futurile.net>
    Change-Id: I695e63e5395f40997ab59706240b8b059778b0ad
    Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

 gnu/packages/statistics.scm | 29 +++++++++++++++++++++--------
 1 file changed, 21 insertions(+), 8 deletions(-)

commit 135632965bd9367ab8a5501d0ea931b464632b92
Author: Nicolas Graves via Guix-patches via <guix-patches@gnu.org>
Date:   Sat Sep 21 23:47:57 2024 +0100

    gnu: python-pkginfo: Update to 1.10.0.

    * gnu/packages/python-xyz.scm (python-pkginfo): Update to 1.10.0.
      [native-inputs]: Add python-wheel.

    Reviewed-by: Steve George <steve@futurile.net>
    Change-Id: I682773a5a5c36c9a2ffd9ce8e96048c08a7a174e
    Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

 gnu/packages/python-xyz.scm | 7 ++++---
 1 file changed, 4 insertions(+), 3 deletions(-)

commit 57502eea74cfd2c4909b3c60ef48887c52fcf9b6
Author: Ricardo Wurmus <rekado@elephly.net>
Date:   Sat Sep 21 23:47:58 2024 +0100

    gnu: python-readme-renderer: Update to 41.0.

    * gnu/packages/python-xyz.scm (python-readme-renderer): Update to 41.0.
    [build-system]: Use pyproject-build-system.
    [arguments]: Delete 'loosen-cmarkgfm-dependency phase; replace custom 'check
    phase with #:test-flags.
    [native-inputs]: Add python-wheel; remove python-mock.

    Reviewed-by: Steve George <steve@futurile.net>
    Change-Id: I47cef84089384d2cf760c166fed9147863d1a415
    Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>

 gnu/packages/python-xyz.scm | 42 ++++++++++++++++++++----------------------
 1 file changed, 20 insertions(+), 22 deletions(-)

> ./pre-inst-env guix describe
Git checkout:
  repository: /mnt/library/code/guix/
  branch: local/20240925180015-issue-73070
  commit: 36206d8c9bff95f76d1a03aa7469d52c71001ead

> ./pre-inst-env guix build python-twine python-altair python-pkginfo python-readme-renderer
/gnu/store/2n0jzdl5g8y7i03s0lg1fjx96lvl4k4f-python-readme-renderer-41.0
/gnu/store/39abidxcpyhmyhkg8mjyjs2imw6wfjf6-python-pkginfo-1.10.0
/gnu/store/9qawasb7d7ci97r8a26nb7wbbn5wi1vl-python-altair-5.3.0
/gnu/store/s9nn4bx7bvakv5vgnsd47w0zqk2j8jfc-python-twine-5.1.1

> ./pre-inst-env guix refresh --list-dependent python-twine python-altair
python-pkginfo python-readme-renderer Building the following 54 packages would
ensure 109 dependent packages are rebuilt: vembrane@0.13.2 aerich@0.7.2
python-gguf@0.6.0 python-nanopb@0.4.6.4 r-torch@0.13.0 python-pytorch-avx@2.4.0
python-cellbender@0.2.2 llama-cpp@0.0.0-3.a5735e4 python-hicexplorer@3.7.4
python-funsor@0.4.5 python-pytorch-geometric@2.4.0 python-deepxde@1.12.1
python-scikit-opt@0.6.6 python-pgmpy@0.1.24 python-fastapi-pagination@0.12.0
python-fastapi-pagination-minimal@0.12.0 python-pynixutil@0.5.0
openconnect-sso@0.8.0 python-hyperkitty@1.3.5 postorius@1.3.6
python-pyahocorasick@2.1.0 python-metacells@0.9.4 mdpo@0.3.6 python-kanon@0.6.6
python-botorch@0.11.3 emacs-flycheck-cpplint@1.0.2 giara@1.0.1
python-scrapy@2.11.1 dialect@2.1.1 offlate@0.6.1 synapse@1.29.0
python-arpeggio@2.0.0 openfoam-com@2212 openfoam-org@10.20230119
python-viresclient@0.12.0 python-metpy@1.6.3 python-sunkit-image@0.5.1
python-radiospectra@0.6.0 python-sbpy@0.4.0 python-jwst-reffiles@1.0.1
python-glue-astronomy@0.10.0 python-naima@0.10.0 python-pymc@5.11.0
python-pyvista@0.42.3 python-cplot@0.9.3 python-quadpy@0.16.10
python-pygmsh@7.1.17 qmk-firmware-ergodox-ez-dvorak@0.22.3
qmk-firmware-ergodox-ez-default@0.22.3
qmk-firmware-ergodox-ez-dvorak-emacs@0.22.3
qmk-firmware-ergodox-ez-dvorak-42-key@0.22.3
qmk-firmware-ergodox-ez-dvorak-emacs-software@0.22.3
qmk-firmware-ergodox-ez-hacker-dvorak@0.22.3 python-transient@0.12

/gnu/store/knpkxhvmb706v27bg56fgyg9x7kjgw9v-python-transient-0.12
/gnu/store/l99h61mbgkzyy579pbw307rfqny9ipzf-qmk-firmware-ergodox-ez-dvorak-emacs-software-0.22.3
/gnu/store/rywlsd4cyyyy7szri2y1yz058bh64jc4-qmk-firmware-ergodox-ez-dvorak-0.22.3
/gnu/store/vh94n4lj5ws72diqkzvw46lzcfv36sw0-qmk-firmware-ergodox-ez-default-0.22.3
/gnu/store/5a9943909dad6pkdz2q3g896cwnhvbpc-qmk-firmware-ergodox-ez-dvorak-42-key-0.22.3
/gnu/store/nxf07rqr5wn7cbrx5nkjrw3m4727p6ng-qmk-firmware-ergodox-ez-hacker-dvorak-0.22.3
/gnu/store/xdrgjk02n70ys9askpmxc14rv4ihr780-qmk-firmware-ergodox-ez-dvorak-emacs-0.22.3
/gnu/store/wcfv8f0r7whzxam956j906qsy1vj5b7i-python-arpeggio-2.0.0
/gnu/store/snnz027isnfybfrh4zdzm9sp7sg2jl0y-synapse-1.29.0
/gnu/store/s2waczpfbrfmjch5b9lbp8wrrhjmxmy4-python-pygmsh-7.1.17
/gnu/store/wjj6cw4mm46qgx13n5lzw0nwdv20a9a5-python-cplot-0.9.3
/gnu/store/c55awr572wvxsyhqw8q383ip3b8h0242-python-quadpy-0.16.10
/gnu/store/fl81sqrw0l2b4b3kxrsslpq84k03wz6m-python-pyvista-0.42.3
/gnu/store/18nn5vb5s8ajfs2dh79pk4w0fw32pdin-python-pymc-5.11.0
/gnu/store/r4md232f6q92jjmn2cgldhld8wkw0aik-python-naima-0.10.0
/gnu/store/y1arrvvz35ykspg6xyprxhw4fhgqizjz-python-glue-astronomy-0.10.0
/gnu/store/jk7bixi9ddr1n3qizgyj858zq01mjm1d-python-jwst-reffiles-1.0.1
/gnu/store/b6a37cb8d07igz1cmrqzx4235b3fi4y5-python-sbpy-0.4.0
/gnu/store/zshayn378k8knx60afx04g9p8chhpb88-python-radiospectra-0.6.0
/gnu/store/rr7ccckqzzqq4m533qadr44102s9rrba-python-sunkit-image-0.5.1
/gnu/store/sij3pl7phihavm4dpr4r37n4alw9w5fd-python-metpy-1.6.3
/gnu/store/j8ars2dbkpkc0y0m4vwksw0w4fdmnip9-python-viresclient-0.12.0
/gnu/store/chx0b5qalb41mj4ai01xyfw44ffkcsr8-openfoam-org-10.20230119-debug
/gnu/store/88dccpv5jaxgz8z1y48jv8y8rvywadp4-openfoam-org-10.20230119
/gnu/store/gggfk1dhll7l1c1fbn48ixx8fwl3gpr8-openfoam-com-2212-debug
/gnu/store/vq1v01l2f00dgg0dp420vr31lxc51gf3-openfoam-com-2212
/gnu/store/9x3xjd1j9x3r236r0hpm22lqxj8gj3zy-offlate-0.6.1
/gnu/store/6476xwb698m8vm8bls6rmd7krrpc7m8a-dialect-2.1.1
/gnu/store/925zxy0z2l3dlmkc4vv4klkdllpfyrqs-emacs-flycheck-cpplint-1.0.2
/gnu/store/fbj3cng0530l4awfym5014sj9yzcya36-python-botorch-0.11.3
/gnu/store/sdswzyf0fbprqzf5acgqavfv43c9fv4h-python-kanon-0.6.6
/gnu/store/3633789m0yj2a4fp4pzf0ksmf48fmrhf-mdpo-0.3.6
/gnu/store/qmclw8kx1ijirlyy91whvzdrw9v55bd5-python-metacells-0.9.4
/gnu/store/99bbvhym157nifsggpj1kfm1ra3lb0n5-python-pyahocorasick-2.1.0
/gnu/store/9947q5rwfghqxn7mvxzrbyprwq6wa64m-postorius-1.3.6
/gnu/store/k7yj3kimj7w9nhz8d7zdbarpsa2f35q2-openconnect-sso-0.8.0
/gnu/store/2dcn4nmlbsbajvnifvcnqnc7g067l026-python-pynixutil-0.5.0
/gnu/store/afah8nnxq23mg95dhafylj404il0a5b8-python-fastapi-pagination-0.12.0
/gnu/store/1kbd60wqs10l2hnag1z27pfgza07hlh8-python-fastapi-pagination-minimal-0.12.0
/gnu/store/bz9ys44yp9nbd2j39fhlp8d0xmsbxbbx-python-pytorch-avx-2.4.0
/gnu/store/h52zbzb40c1md44balr2zigddzqfdz58-python-pgmpy-0.1.24
/gnu/store/si12bwzr7jnv1y69374fk1bwwamc986q-python-scikit-opt-0.6.6
/gnu/store/qcflylnk7sd5na822sna81x70amfl24j-python-deepxde-1.12.1
/gnu/store/frj7fph5lw8fxi0zjw1avsgn4vdwp0vm-llama-cpp-0.0.0-3.a5735e4
/gnu/store/byvm4iw498g3m3m44zjnrf9ds7qi5vyc-python-nanopb-0.4.6.4
/gnu/store/pjz97lig33dbn4yfxgpl09s9a89x6v6g-python-gguf-0.6.0
/gnu/store/rpzykn62lzz6q63mra76qh1q953k19a2-aerich-0.7.2
/gnu/store/imbwgd4id9a9825ls9cwsjyzylldcbxl-vembrane-0.13.2

Failed:

- python-scrapy@2.11.1
- python-funsor@0.4.5
- python-hyperkitty@1.3.5
- python-pytorch-geometric@2.4.0
- python-hicexplorer@3.7.4
- giara@1.0.1
- r-torch@0.13.0
- python-cellbender@0.2.2

FAILED tests/test_downloadermiddleware_cookies.py::CookiesMiddlewareTest::test_user_set_cookie_domain_suffix_public_private
= 25 failed, 2974 passed, 336 skipped, 13 deselected, 21 xfailed, 862 warnings in 396.85s (0:06:36) =
error: in phase 'check': uncaught exception:
%exception #<&invoke-error program: "/gnu/store/94v3qb2h2r03d1xwl6wmrln10xg6nwhm-python-pytest-7.1.3/bin/pytest" arguments: ("-vv" "-k" "not test_SCRAPY_CHECK_set and not test_check_all_default_contracts and not test_check_cb_kwargs_contract and not test_check_returns_items_contract and not test_check_returns_requests_contract and not test_check_scrapes_contract and not test_pformat and not test_pformat_old_windows and not test_pformat_windows") exit-status: 1 term-signal: #f stop-signal: #f>
phase `check' failed after 398.7 seconds
command "/gnu/store/94v3qb2h2r03d1xwl6wmrln10xg6nwhm-python-pytest-7.1.3/bin/pytest" "-vv" "-k" "not test_SCRAPY_CHECK_set and not test_check_all_default_contracts and not test_check_cb_kwargs_contract and not test_check_returns_items_contract and not test_check_returns_requests_contract and not test_check_scrapes_contract and not test_pformat and not test_pformat_old_windows and not test_pformat_windows" failed with status 1
build process 18 exited with status 256
builder for `/gnu/store/s3g9wqksch3887n5xxhyxi5mc6bp4ld0-python-scrapy-2.11.1.drv' failed with exit code 1
build of /gnu/store/s3g9wqksch3887n5xxhyxi5mc6bp4ld0-python-scrapy-2.11.1.drv failed
View build log at '/var/log/guix/drvs/s3/g9wqksch3887n5xxhyxi5mc6bp4ld0-python-scrapy-2.11.1.drv.gz'.
guix build: error: build of `/gnu/store/s3g9wqksch3887n5xxhyxi5mc6bp4ld0-python-scrapy-2.11.1.drv' failed

ImportError: cannot import name 'escape_html' from 'mistune.scanner' (/gnu/store/9h0xwhs647kzyn49m9sq86qkx3f1xm80-python-mistune-next-2.0.4/lib/python3.10/site-packages/mistune/scanner.py)

The above exception was the direct cause of the following exception:

django.template.library.InvalidTemplateLibrary: Invalid template library specified. ImportError raised when trying to load 'hyperkitty.templatetags.decorate': cannot import name 'escape_html' from 'mistune.scanner' (/gnu/store/9h0xwhs647kzyn49m9sq86qkx3f1xm80-python-mistune-next-2.0.4/lib/python3.10/site-packages/mistune/scanner.py)
error: in phase 'check': uncaught exception:
%exception #<&invoke-error program: "example_project/manage.py" arguments: ("test" "--settings=hyperkitty.tests.settings_test" "--pythonpath=.") exit-status: 1 term-signal: #f stop-signal: #f>
phase `check' failed after 2.2 seconds
command "example_project/manage.py" "test" "--settings=hyperkitty.tests.settings_test" "--pythonpath=." failed with status 1
build process 18 exited with status 256
builder for `/gnu/store/fqsdzrrf12nlq5ls6dy6b5zhmc7fab4j-python-hyperkitty-1.3.5.drv' failed with exit code 1
build of /gnu/store/fqsdzrrf12nlq5ls6dy6b5zhmc7fab4j-python-hyperkitty-1.3.5.drv failed
View build log at '/var/log/guix/drvs/fq/sdzrrf12nlq5ls6dy6b5zhmc7fab4j-python-hyperkitty-1.3.5.drv.gz'.
guix build: error: build of `/gnu/store/fqsdzrrf12nlq5ls6dy6b5zhmc7fab4j-python-hyperkitty-1.3.5.drv' failed

XFAIL Tests/test_image_resample.py::TestCoreResampleAlphaCorrect::test_levels_rgba
  Current implementation isn't precise enough
XFAIL Tests/test_image_resample.py::TestCoreResampleAlphaCorrect::test_levels_la
  Current implementation isn't precise enough
XPASS Tests/test_file_palm.py::test_p_mode Palm P image is wrong
FAILED Tests/test_file_png.py::TestFilePng::test_sanity - AssertionError: ass...
= 1 failed, 2981 passed, 81 skipped, 2 xfailed, 1 xpassed, 5 warnings in 28.97s =
error: in phase 'check': uncaught exception:
%exception #<&invoke-error program: "python" arguments: ("-m" "pytest" "-vv") exit-status: 1 term-signal: #f stop-signal: #f>
phase `check' failed after 29.4 seconds
command "python" "-m" "pytest" "-vv" failed with status 1
build process 18 exited with status 256
builder for `/gnu/store/9hsgcmgjh1h6cg7k62g7j3qwdk11cc37-python-pillow-simd-9.2.0.drv' failed with exit code 1
build of /gnu/store/9hsgcmgjh1h6cg7k62g7j3qwdk11cc37-python-pillow-simd-9.2.0.drv failed
View build log at '/var/log/guix/drvs/9h/sgcmgjh1h6cg7k62g7j3qwdk11cc37-python-pillow-simd-9.2.0.drv.gz'.
cannot build derivation `/gnu/store/vdd7j9kczmqh0gigam9294zn7w7gq6jq-python-cleanlab-2.6.3.drv': 1 dependencies couldn't be built
cannot build derivation `/gnu/store/hj3ahss8p9ml8x6wlqsazp8z5vir1nqr-python-funsor-0.4.5.drv': 1 dependencies couldn't be built
guix build: error: build of `/gnu/store/hj3ahss8p9ml8x6wlqsazp8z5vir1nqr-python-funsor-0.4.5.drv' failed

XPASS Tests/test_file_palm.py::test_p_mode Palm P image is wrong
FAILED Tests/test_file_png.py::TestFilePng::test_sanity - AssertionError: ass...
= 1 failed, 2981 passed, 81 skipped, 2 xfailed, 1 xpassed, 5 warnings in 28.54s =
error: in phase 'check': uncaught exception:
%exception #<&invoke-error program: "python" arguments: ("-m" "pytest" "-vv") exit-status: 1 term-signal: #f stop-signal: #f>
phase `check' failed after 28.9 seconds
command "python" "-m" "pytest" "-vv" failed with status 1
build process 18 exited with status 256
builder for `/gnu/store/9hsgcmgjh1h6cg7k62g7j3qwdk11cc37-python-pillow-simd-9.2.0.drv' failed with exit code 1
build of /gnu/store/9hsgcmgjh1h6cg7k62g7j3qwdk11cc37-python-pillow-simd-9.2.0.drv failed
View build log at '/var/log/guix/drvs/9h/sgcmgjh1h6cg7k62g7j3qwdk11cc37-python-pillow-simd-9.2.0.drv.gz'.
cannot build derivation `/gnu/store/vdd7j9kczmqh0gigam9294zn7w7gq6jq-python-cleanlab-2.6.3.drv': 1 dependencies couldn't be built
building /gnu/store/kwjdijyqn2v3w2idbln9gkk10lm9r2wc-python-praw-7.6.1.drv...
cannot build derivation `/gnu/store/sv8nnhla30v758iwksd680gwn3rg8705-python-pytorch-geometric-2.4.0.drv': 1 dependencies couldn't be built
guix build: error: build of `/gnu/store/sv8nnhla30v758iwksd680gwn3rg8705-python-pytorch-geometric-2.4.0.drv' failed

FAILED Tests/test_file_png.py::TestFilePng::test_sanity - AssertionError: ass...
= 1 failed, 2981 passed, 81 skipped, 2 xfailed, 1 xpassed, 5 warnings in 28.67s =
error: in phase 'check': uncaught exception:
%exception #<&invoke-error program: "python" arguments: ("-m" "pytest" "-vv") exit-status: 1 term-signal: #f stop-signal: #f>
phase `check' failed after 29.0 seconds
command "python" "-m" "pytest" "-vv" failed with status 1
build process 18 exited with status 256
builder for `/gnu/store/9hsgcmgjh1h6cg7k62g7j3qwdk11cc37-python-pillow-simd-9.2.0.drv' failed with exit code 1
build of /gnu/store/9hsgcmgjh1h6cg7k62g7j3qwdk11cc37-python-pillow-simd-9.2.0.drv failed
View build log at '/var/log/guix/drvs/9h/sgcmgjh1h6cg7k62g7j3qwdk11cc37-python-pillow-simd-9.2.0.drv.gz'.
cannot build derivation `/gnu/store/vdd7j9kczmqh0gigam9294zn7w7gq6jq-python-cleanlab-2.6.3.drv': 1 dependencies couldn't be built
building /gnu/store/kwjdijyqn2v3w2idbln9gkk10lm9r2wc-python-praw-7.6.1.drv...
cannot build derivation `/gnu/store/mf8mbh9s4ks835805qp13v9cjh6w1jbk-python-hicexplorer-3.7.4.drv': 1 dependencies couldn't be built
guix build: error: build of `/gnu/store/mf8mbh9s4ks835805qp13v9cjh6w1jbk-python-hicexplorer-3.7.4.drv' failed

Full log written to /tmp/guix-build-giara-1.0.1.drv-0/build/meson-logs/testlog.txt
error: in phase 'check': uncaught exception:
%exception #<&invoke-error program: "meson" arguments: ("test" "--print-errorlogs" "-t" "0") exit-status: 1 term-signal: #f stop-signal: #f>
phase `check' failed after 0.2 seconds
command "meson" "test" "--print-errorlogs" "-t" "0" failed with status 1
build process 18 exited with status 256
builder for `/gnu/store/8rss4nxhfjcrhpm6rbdsa2q5zccls0lr-giara-1.0.1.drv' failed with exit code 1
build of /gnu/store/8rss4nxhfjcrhpm6rbdsa2q5zccls0lr-giara-1.0.1.drv failed
View build log at '/var/log/guix/drvs/8r/ss4nxhfjcrhpm6rbdsa2q5zccls0lr-giara-1.0.1.drv.gz'.
guix build: error: build of `/gnu/store/8rss4nxhfjcrhpm6rbdsa2q5zccls0lr-giara-1.0.1.drv' failed

[175/1730] Building CXX object caffe2/CMakeFiles/vec_test_all_types_DEFAULT.dir/__/aten/src/ATen/test/vec_test_all_types.cpp.o
ninja: build stopped: subcommand failed.

cmake --build . --target install --config Release -- -j 16
error: in phase 'build': uncaught exception:
%exception #<&invoke-error program: "python" arguments: ("-c" "import setuptools, tokenize;__file__='setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\\r\\n', '\\n');f.close();exec(compile(code, __file__, 'exec'))" "build") exit-status: 1 term-signal: #f stop-signal: #f>
phase `build' failed after 98.6 seconds
command "python" "-c" "import setuptools, tokenize;__file__='setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\\r\\n', '\\n');f.close();exec(compile(code, __file__, 'exec'))" "build" failed with status 1
build process 18 exited with status 256
builder for `/gnu/store/djljl1y3vznc4iqwjqgfxvyzfajijgx8-python-pytorch-2.0.1.drv' failed with exit code 1
build of /gnu/store/djljl1y3vznc4iqwjqgfxvyzfajijgx8-python-pytorch-2.0.1.drv failed
View build log at '/var/log/guix/drvs/dj/ljl1y3vznc4iqwjqgfxvyzfajijgx8-python-pytorch-2.0.1.drv.gz'.
building /gnu/store/pm7wagzrxkm5cqv6pfzxklirlw9g5h5p-python-sphobjinv-2.0.1.drv...
cannot build derivation `/gnu/store/czp80g0kld1kh0c1slrzhih4iilwxmy2-r-torch-0.13.0.drv': 1 dependencies couldn't be built
guix build: error: build of `/gnu/store/czp80g0kld1kh0c1slrzhih4iilwxmy2-r-torch-0.13.0.drv' failed

error: in phase 'sanity-check': uncaught exception:
%exception #<&invoke-error program: "python" arguments: ("/gnu/store/iqsjkp55pcx5bfcp2jm9yj5rlx9a0whd-sanity-check.py" "/gnu/store/r5f432953qhamyq4ap9cwk9dz70413rd-python-sphobjinv-2.0.1/lib/python3.10/site-packages") exit-status: 1 term-signal: #f stop-signal: #f>
phase `sanity-check' failed after 0.2 seconds
command "python" "/gnu/store/iqsjkp55pcx5bfcp2jm9yj5rlx9a0whd-sanity-check.py" "/gnu/store/r5f432953qhamyq4ap9cwk9dz70413rd-python-sphobjinv-2.0.1/lib/python3.10/site-packages" failed with status 1
build process 18 exited with status 256
builder for `/gnu/store/pm7wagzrxkm5cqv6pfzxklirlw9g5h5p-python-sphobjinv-2.0.1.drv' failed with exit code 1
build of /gnu/store/pm7wagzrxkm5cqv6pfzxklirlw9g5h5p-python-sphobjinv-2.0.1.drv failed
View build log at '/var/log/guix/drvs/pm/7wagzrxkm5cqv6pfzxklirlw9g5h5p-python-sphobjinv-2.0.1.drv.gz'.
cannot build derivation `/gnu/store/w6r8nnfv2jvgpy5sd1hykmpyw8w84v28-python-sphinx-autodoc-typehints-1.18.3.drv': 1 dependencies couldn't be built
building /gnu/store/qh0wprkykp4rxyqwpd8kngyd1sg2d0yp-python-stpipe-0.7.0.drv...
cannot build derivation `/gnu/store/bwxzrp3m4b2r46sjk7jbhx8x7ka6j1sm-python-cellbender-0.2.2.drv': 1 dependencies couldn't be built
guix build: error: build of `/gnu/store/bwxzrp3m4b2r46sjk7jbhx8x7ka6j1sm-python-cellbender-0.2.2.drv' failed
--8<---------------cut here---------------end--------------->8---
Nicolas Graves Sept. 26, 2024, 6:57 a.m. UTC | #2 
On 2024-09-26 00:03, Sharlatan Hellseher wrote:

> Hi!
>
> After 4h of building the chain it's finally finished with majority
> packages successfully finished
>
> Please see the stats:

Hi Sharlatan, thanks !

Also big thanks Steve, indeed I lost one commit. python-altair is not a
part of "python dev environment", this is a mistake where I replaced a
patch by another one.

Is that review finished / confirmed, or do you still expect trying to
fix the failures? Is it unlikely that they are related to the updates or
these packages.

>
> --8<---------------cut here---------------start------------->8---
>> git log -4 --stat
> commit 36206d8c9bff95f76d1a03aa7469d52c71001ead (HEAD -> local/20240925180015-issue-73070)
> Author: Nicolas Graves via Guix-patches via <guix-patches@gnu.org>
> Date:   Sat Sep 21 23:47:59 2024 +0100
>
>     gnu: python-twine: Update to 5.1.1.
>
>     * gnu/packages/python-xyz.scm (python-twine): Update to 5.1.1.
>       [build-system]: Move to pyproject-build-system.
>       [arguments]<#:test-flags>: Disable failing tests.
>       [native-inputs]: Add python-pretend, python-pytest, python-pytest-socket.
>       [propagated-inputs]: Remove python-tqdm, python-packaging. Add
>       python-imporlib-metadata, python-keyring, python-rfc3986,
>       python-rich and python-urllib3.
>
>     Reviewed-by: Steve George <steve@futurile.net>
>     Change-Id: I55dbcd646dec60cfe8ec226aed0cf3f8c59e2eeb
>     Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
>
>  gnu/packages/python-xyz.scm | 34 +++++++++++++++++++++++-----------
>  1 file changed, 23 insertions(+), 11 deletions(-)
>
> commit 14c2654b2f9ea3adaa444d1a59be66724c974108
> Author: Nicolas Graves via Guix-patches via <guix-patches@gnu.org>
> Date:   Sat Sep 21 23:48:00 2024 +0100
>
>     gnu: python-altair: Update to 5.3.0.
>
>     * gnu/packages/statistics.scm (python-altair): Update to 5.3.0.
>       [arguments]<#:test-flags>: Add failing tests, reorganize.
>
>     Reviewed-by: Steve George <steve@futurile.net>
>     Change-Id: I695e63e5395f40997ab59706240b8b059778b0ad
>     Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
>
>  gnu/packages/statistics.scm | 29 +++++++++++++++++++++--------
>  1 file changed, 21 insertions(+), 8 deletions(-)
>
> commit 135632965bd9367ab8a5501d0ea931b464632b92
> Author: Nicolas Graves via Guix-patches via <guix-patches@gnu.org>
> Date:   Sat Sep 21 23:47:57 2024 +0100
>
>     gnu: python-pkginfo: Update to 1.10.0.
>
>     * gnu/packages/python-xyz.scm (python-pkginfo): Update to 1.10.0.
>       [native-inputs]: Add python-wheel.
>
>     Reviewed-by: Steve George <steve@futurile.net>
>     Change-Id: I682773a5a5c36c9a2ffd9ce8e96048c08a7a174e
>     Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
>
>  gnu/packages/python-xyz.scm | 7 ++++---
>  1 file changed, 4 insertions(+), 3 deletions(-)
>
> commit 57502eea74cfd2c4909b3c60ef48887c52fcf9b6
> Author: Ricardo Wurmus <rekado@elephly.net>
> Date:   Sat Sep 21 23:47:58 2024 +0100
>
>     gnu: python-readme-renderer: Update to 41.0.
>
>     * gnu/packages/python-xyz.scm (python-readme-renderer): Update to 41.0.
>     [build-system]: Use pyproject-build-system.
>     [arguments]: Delete 'loosen-cmarkgfm-dependency phase; replace custom 'check
>     phase with #:test-flags.
>     [native-inputs]: Add python-wheel; remove python-mock.
>
>     Reviewed-by: Steve George <steve@futurile.net>
>     Change-Id: I47cef84089384d2cf760c166fed9147863d1a415
>     Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
>
>  gnu/packages/python-xyz.scm | 42 ++++++++++++++++++++----------------------
>  1 file changed, 20 insertions(+), 22 deletions(-)
>
>> ./pre-inst-env guix describe
> Git checkout:
>   repository: /mnt/library/code/guix/
>   branch: local/20240925180015-issue-73070
>   commit: 36206d8c9bff95f76d1a03aa7469d52c71001ead
>
>> ./pre-inst-env guix build python-twine python-altair python-pkginfo python-readme-renderer
> /gnu/store/2n0jzdl5g8y7i03s0lg1fjx96lvl4k4f-python-readme-renderer-41.0
> /gnu/store/39abidxcpyhmyhkg8mjyjs2imw6wfjf6-python-pkginfo-1.10.0
> /gnu/store/9qawasb7d7ci97r8a26nb7wbbn5wi1vl-python-altair-5.3.0
> /gnu/store/s9nn4bx7bvakv5vgnsd47w0zqk2j8jfc-python-twine-5.1.1
>
>> ./pre-inst-env guix refresh --list-dependent python-twine python-altair
> python-pkginfo python-readme-renderer Building the following 54 packages would
> ensure 109 dependent packages are rebuilt: vembrane@0.13.2 aerich@0.7.2
> python-gguf@0.6.0 python-nanopb@0.4.6.4 r-torch@0.13.0 python-pytorch-avx@2.4.0
> python-cellbender@0.2.2 llama-cpp@0.0.0-3.a5735e4 python-hicexplorer@3.7.4
> python-funsor@0.4.5 python-pytorch-geometric@2.4.0 python-deepxde@1.12.1
> python-scikit-opt@0.6.6 python-pgmpy@0.1.24 python-fastapi-pagination@0.12.0
> python-fastapi-pagination-minimal@0.12.0 python-pynixutil@0.5.0
> openconnect-sso@0.8.0 python-hyperkitty@1.3.5 postorius@1.3.6
> python-pyahocorasick@2.1.0 python-metacells@0.9.4 mdpo@0.3.6 python-kanon@0.6.6
> python-botorch@0.11.3 emacs-flycheck-cpplint@1.0.2 giara@1.0.1
> python-scrapy@2.11.1 dialect@2.1.1 offlate@0.6.1 synapse@1.29.0
> python-arpeggio@2.0.0 openfoam-com@2212 openfoam-org@10.20230119
> python-viresclient@0.12.0 python-metpy@1.6.3 python-sunkit-image@0.5.1
> python-radiospectra@0.6.0 python-sbpy@0.4.0 python-jwst-reffiles@1.0.1
> python-glue-astronomy@0.10.0 python-naima@0.10.0 python-pymc@5.11.0
> python-pyvista@0.42.3 python-cplot@0.9.3 python-quadpy@0.16.10
> python-pygmsh@7.1.17 qmk-firmware-ergodox-ez-dvorak@0.22.3
> qmk-firmware-ergodox-ez-default@0.22.3
> qmk-firmware-ergodox-ez-dvorak-emacs@0.22.3
> qmk-firmware-ergodox-ez-dvorak-42-key@0.22.3
> qmk-firmware-ergodox-ez-dvorak-emacs-software@0.22.3
> qmk-firmware-ergodox-ez-hacker-dvorak@0.22.3 python-transient@0.12
>
> /gnu/store/knpkxhvmb706v27bg56fgyg9x7kjgw9v-python-transient-0.12
> /gnu/store/l99h61mbgkzyy579pbw307rfqny9ipzf-qmk-firmware-ergodox-ez-dvorak-emacs-software-0.22.3
> /gnu/store/rywlsd4cyyyy7szri2y1yz058bh64jc4-qmk-firmware-ergodox-ez-dvorak-0.22.3
> /gnu/store/vh94n4lj5ws72diqkzvw46lzcfv36sw0-qmk-firmware-ergodox-ez-default-0.22.3
> /gnu/store/5a9943909dad6pkdz2q3g896cwnhvbpc-qmk-firmware-ergodox-ez-dvorak-42-key-0.22.3
> /gnu/store/nxf07rqr5wn7cbrx5nkjrw3m4727p6ng-qmk-firmware-ergodox-ez-hacker-dvorak-0.22.3
> /gnu/store/xdrgjk02n70ys9askpmxc14rv4ihr780-qmk-firmware-ergodox-ez-dvorak-emacs-0.22.3
> /gnu/store/wcfv8f0r7whzxam956j906qsy1vj5b7i-python-arpeggio-2.0.0
> /gnu/store/snnz027isnfybfrh4zdzm9sp7sg2jl0y-synapse-1.29.0
> /gnu/store/s2waczpfbrfmjch5b9lbp8wrrhjmxmy4-python-pygmsh-7.1.17
> /gnu/store/wjj6cw4mm46qgx13n5lzw0nwdv20a9a5-python-cplot-0.9.3
> /gnu/store/c55awr572wvxsyhqw8q383ip3b8h0242-python-quadpy-0.16.10
> /gnu/store/fl81sqrw0l2b4b3kxrsslpq84k03wz6m-python-pyvista-0.42.3
> /gnu/store/18nn5vb5s8ajfs2dh79pk4w0fw32pdin-python-pymc-5.11.0
> /gnu/store/r4md232f6q92jjmn2cgldhld8wkw0aik-python-naima-0.10.0
> /gnu/store/y1arrvvz35ykspg6xyprxhw4fhgqizjz-python-glue-astronomy-0.10.0
> /gnu/store/jk7bixi9ddr1n3qizgyj858zq01mjm1d-python-jwst-reffiles-1.0.1
> /gnu/store/b6a37cb8d07igz1cmrqzx4235b3fi4y5-python-sbpy-0.4.0
> /gnu/store/zshayn378k8knx60afx04g9p8chhpb88-python-radiospectra-0.6.0
> /gnu/store/rr7ccckqzzqq4m533qadr44102s9rrba-python-sunkit-image-0.5.1
> /gnu/store/sij3pl7phihavm4dpr4r37n4alw9w5fd-python-metpy-1.6.3
> /gnu/store/j8ars2dbkpkc0y0m4vwksw0w4fdmnip9-python-viresclient-0.12.0
> /gnu/store/chx0b5qalb41mj4ai01xyfw44ffkcsr8-openfoam-org-10.20230119-debug
> /gnu/store/88dccpv5jaxgz8z1y48jv8y8rvywadp4-openfoam-org-10.20230119
> /gnu/store/gggfk1dhll7l1c1fbn48ixx8fwl3gpr8-openfoam-com-2212-debug
> /gnu/store/vq1v01l2f00dgg0dp420vr31lxc51gf3-openfoam-com-2212
> /gnu/store/9x3xjd1j9x3r236r0hpm22lqxj8gj3zy-offlate-0.6.1
> /gnu/store/6476xwb698m8vm8bls6rmd7krrpc7m8a-dialect-2.1.1
> /gnu/store/925zxy0z2l3dlmkc4vv4klkdllpfyrqs-emacs-flycheck-cpplint-1.0.2
> /gnu/store/fbj3cng0530l4awfym5014sj9yzcya36-python-botorch-0.11.3
> /gnu/store/sdswzyf0fbprqzf5acgqavfv43c9fv4h-python-kanon-0.6.6
> /gnu/store/3633789m0yj2a4fp4pzf0ksmf48fmrhf-mdpo-0.3.6
> /gnu/store/qmclw8kx1ijirlyy91whvzdrw9v55bd5-python-metacells-0.9.4
> /gnu/store/99bbvhym157nifsggpj1kfm1ra3lb0n5-python-pyahocorasick-2.1.0
> /gnu/store/9947q5rwfghqxn7mvxzrbyprwq6wa64m-postorius-1.3.6
> /gnu/store/k7yj3kimj7w9nhz8d7zdbarpsa2f35q2-openconnect-sso-0.8.0
> /gnu/store/2dcn4nmlbsbajvnifvcnqnc7g067l026-python-pynixutil-0.5.0
> /gnu/store/afah8nnxq23mg95dhafylj404il0a5b8-python-fastapi-pagination-0.12.0
> /gnu/store/1kbd60wqs10l2hnag1z27pfgza07hlh8-python-fastapi-pagination-minimal-0.12.0
> /gnu/store/bz9ys44yp9nbd2j39fhlp8d0xmsbxbbx-python-pytorch-avx-2.4.0
> /gnu/store/h52zbzb40c1md44balr2zigddzqfdz58-python-pgmpy-0.1.24
> /gnu/store/si12bwzr7jnv1y69374fk1bwwamc986q-python-scikit-opt-0.6.6
> /gnu/store/qcflylnk7sd5na822sna81x70amfl24j-python-deepxde-1.12.1
> /gnu/store/frj7fph5lw8fxi0zjw1avsgn4vdwp0vm-llama-cpp-0.0.0-3.a5735e4
> /gnu/store/byvm4iw498g3m3m44zjnrf9ds7qi5vyc-python-nanopb-0.4.6.4
> /gnu/store/pjz97lig33dbn4yfxgpl09s9a89x6v6g-python-gguf-0.6.0
> /gnu/store/rpzykn62lzz6q63mra76qh1q953k19a2-aerich-0.7.2
> /gnu/store/imbwgd4id9a9825ls9cwsjyzylldcbxl-vembrane-0.13.2
>
> Failed:
>
> - python-scrapy@2.11.1
> - python-funsor@0.4.5
> - python-hyperkitty@1.3.5
> - python-pytorch-geometric@2.4.0
> - python-hicexplorer@3.7.4
> - giara@1.0.1
> - r-torch@0.13.0
> - python-cellbender@0.2.2
>
> FAILED tests/test_downloadermiddleware_cookies.py::CookiesMiddlewareTest::test_user_set_cookie_domain_suffix_public_private
> = 25 failed, 2974 passed, 336 skipped, 13 deselected, 21 xfailed, 862 warnings in 396.85s (0:06:36) =
> error: in phase 'check': uncaught exception:
> %exception #<&invoke-error program: "/gnu/store/94v3qb2h2r03d1xwl6wmrln10xg6nwhm-python-pytest-7.1.3/bin/pytest" arguments: ("-vv" "-k" "not test_SCRAPY_CHECK_set and not test_check_all_default_contracts and not test_check_cb_kwargs_contract and not test_check_returns_items_contract and not test_check_returns_requests_contract and not test_check_scrapes_contract and not test_pformat and not test_pformat_old_windows and not test_pformat_windows") exit-status: 1 term-signal: #f stop-signal: #f>
> phase `check' failed after 398.7 seconds
> command "/gnu/store/94v3qb2h2r03d1xwl6wmrln10xg6nwhm-python-pytest-7.1.3/bin/pytest" "-vv" "-k" "not test_SCRAPY_CHECK_set and not test_check_all_default_contracts and not test_check_cb_kwargs_contract and not test_check_returns_items_contract and not test_check_returns_requests_contract and not test_check_scrapes_contract and not test_pformat and not test_pformat_old_windows and not test_pformat_windows" failed with status 1
> build process 18 exited with status 256
> builder for `/gnu/store/s3g9wqksch3887n5xxhyxi5mc6bp4ld0-python-scrapy-2.11.1.drv' failed with exit code 1
> build of /gnu/store/s3g9wqksch3887n5xxhyxi5mc6bp4ld0-python-scrapy-2.11.1.drv failed
> View build log at '/var/log/guix/drvs/s3/g9wqksch3887n5xxhyxi5mc6bp4ld0-python-scrapy-2.11.1.drv.gz'.
> guix build: error: build of `/gnu/store/s3g9wqksch3887n5xxhyxi5mc6bp4ld0-python-scrapy-2.11.1.drv' failed
>
> ImportError: cannot import name 'escape_html' from 'mistune.scanner' (/gnu/store/9h0xwhs647kzyn49m9sq86qkx3f1xm80-python-mistune-next-2.0.4/lib/python3.10/site-packages/mistune/scanner.py)
>
> The above exception was the direct cause of the following exception:
>
> django.template.library.InvalidTemplateLibrary: Invalid template library specified. ImportError raised when trying to load 'hyperkitty.templatetags.decorate': cannot import name 'escape_html' from 'mistune.scanner' (/gnu/store/9h0xwhs647kzyn49m9sq86qkx3f1xm80-python-mistune-next-2.0.4/lib/python3.10/site-packages/mistune/scanner.py)
> error: in phase 'check': uncaught exception:
> %exception #<&invoke-error program: "example_project/manage.py" arguments: ("test" "--settings=hyperkitty.tests.settings_test" "--pythonpath=.") exit-status: 1 term-signal: #f stop-signal: #f>
> phase `check' failed after 2.2 seconds
> command "example_project/manage.py" "test" "--settings=hyperkitty.tests.settings_test" "--pythonpath=." failed with status 1
> build process 18 exited with status 256
> builder for `/gnu/store/fqsdzrrf12nlq5ls6dy6b5zhmc7fab4j-python-hyperkitty-1.3.5.drv' failed with exit code 1
> build of /gnu/store/fqsdzrrf12nlq5ls6dy6b5zhmc7fab4j-python-hyperkitty-1.3.5.drv failed
> View build log at '/var/log/guix/drvs/fq/sdzrrf12nlq5ls6dy6b5zhmc7fab4j-python-hyperkitty-1.3.5.drv.gz'.
> guix build: error: build of `/gnu/store/fqsdzrrf12nlq5ls6dy6b5zhmc7fab4j-python-hyperkitty-1.3.5.drv' failed
>
> XFAIL Tests/test_image_resample.py::TestCoreResampleAlphaCorrect::test_levels_rgba
>   Current implementation isn't precise enough
> XFAIL Tests/test_image_resample.py::TestCoreResampleAlphaCorrect::test_levels_la
>   Current implementation isn't precise enough
> XPASS Tests/test_file_palm.py::test_p_mode Palm P image is wrong
> FAILED Tests/test_file_png.py::TestFilePng::test_sanity - AssertionError: ass...
> = 1 failed, 2981 passed, 81 skipped, 2 xfailed, 1 xpassed, 5 warnings in 28.97s =
> error: in phase 'check': uncaught exception:
> %exception #<&invoke-error program: "python" arguments: ("-m" "pytest" "-vv") exit-status: 1 term-signal: #f stop-signal: #f>
> phase `check' failed after 29.4 seconds
> command "python" "-m" "pytest" "-vv" failed with status 1
> build process 18 exited with status 256
> builder for `/gnu/store/9hsgcmgjh1h6cg7k62g7j3qwdk11cc37-python-pillow-simd-9.2.0.drv' failed with exit code 1
> build of /gnu/store/9hsgcmgjh1h6cg7k62g7j3qwdk11cc37-python-pillow-simd-9.2.0.drv failed
> View build log at '/var/log/guix/drvs/9h/sgcmgjh1h6cg7k62g7j3qwdk11cc37-python-pillow-simd-9.2.0.drv.gz'.
> cannot build derivation `/gnu/store/vdd7j9kczmqh0gigam9294zn7w7gq6jq-python-cleanlab-2.6.3.drv': 1 dependencies couldn't be built
> cannot build derivation `/gnu/store/hj3ahss8p9ml8x6wlqsazp8z5vir1nqr-python-funsor-0.4.5.drv': 1 dependencies couldn't be built
> guix build: error: build of `/gnu/store/hj3ahss8p9ml8x6wlqsazp8z5vir1nqr-python-funsor-0.4.5.drv' failed
>
> XPASS Tests/test_file_palm.py::test_p_mode Palm P image is wrong
> FAILED Tests/test_file_png.py::TestFilePng::test_sanity - AssertionError: ass...
> = 1 failed, 2981 passed, 81 skipped, 2 xfailed, 1 xpassed, 5 warnings in 28.54s =
> error: in phase 'check': uncaught exception:
> %exception #<&invoke-error program: "python" arguments: ("-m" "pytest" "-vv") exit-status: 1 term-signal: #f stop-signal: #f>
> phase `check' failed after 28.9 seconds
> command "python" "-m" "pytest" "-vv" failed with status 1
> build process 18 exited with status 256
> builder for `/gnu/store/9hsgcmgjh1h6cg7k62g7j3qwdk11cc37-python-pillow-simd-9.2.0.drv' failed with exit code 1
> build of /gnu/store/9hsgcmgjh1h6cg7k62g7j3qwdk11cc37-python-pillow-simd-9.2.0.drv failed
> View build log at '/var/log/guix/drvs/9h/sgcmgjh1h6cg7k62g7j3qwdk11cc37-python-pillow-simd-9.2.0.drv.gz'.
> cannot build derivation `/gnu/store/vdd7j9kczmqh0gigam9294zn7w7gq6jq-python-cleanlab-2.6.3.drv': 1 dependencies couldn't be built
> building /gnu/store/kwjdijyqn2v3w2idbln9gkk10lm9r2wc-python-praw-7.6.1.drv...
> cannot build derivation `/gnu/store/sv8nnhla30v758iwksd680gwn3rg8705-python-pytorch-geometric-2.4.0.drv': 1 dependencies couldn't be built
> guix build: error: build of `/gnu/store/sv8nnhla30v758iwksd680gwn3rg8705-python-pytorch-geometric-2.4.0.drv' failed
>
> FAILED Tests/test_file_png.py::TestFilePng::test_sanity - AssertionError: ass...
> = 1 failed, 2981 passed, 81 skipped, 2 xfailed, 1 xpassed, 5 warnings in 28.67s =
> error: in phase 'check': uncaught exception:
> %exception #<&invoke-error program: "python" arguments: ("-m" "pytest" "-vv") exit-status: 1 term-signal: #f stop-signal: #f>
> phase `check' failed after 29.0 seconds
> command "python" "-m" "pytest" "-vv" failed with status 1
> build process 18 exited with status 256
> builder for `/gnu/store/9hsgcmgjh1h6cg7k62g7j3qwdk11cc37-python-pillow-simd-9.2.0.drv' failed with exit code 1
> build of /gnu/store/9hsgcmgjh1h6cg7k62g7j3qwdk11cc37-python-pillow-simd-9.2.0.drv failed
> View build log at '/var/log/guix/drvs/9h/sgcmgjh1h6cg7k62g7j3qwdk11cc37-python-pillow-simd-9.2.0.drv.gz'.
> cannot build derivation `/gnu/store/vdd7j9kczmqh0gigam9294zn7w7gq6jq-python-cleanlab-2.6.3.drv': 1 dependencies couldn't be built
> building /gnu/store/kwjdijyqn2v3w2idbln9gkk10lm9r2wc-python-praw-7.6.1.drv...
> cannot build derivation `/gnu/store/mf8mbh9s4ks835805qp13v9cjh6w1jbk-python-hicexplorer-3.7.4.drv': 1 dependencies couldn't be built
> guix build: error: build of `/gnu/store/mf8mbh9s4ks835805qp13v9cjh6w1jbk-python-hicexplorer-3.7.4.drv' failed
>
> Full log written to /tmp/guix-build-giara-1.0.1.drv-0/build/meson-logs/testlog.txt
> error: in phase 'check': uncaught exception:
> %exception #<&invoke-error program: "meson" arguments: ("test" "--print-errorlogs" "-t" "0") exit-status: 1 term-signal: #f stop-signal: #f>
> phase `check' failed after 0.2 seconds
> command "meson" "test" "--print-errorlogs" "-t" "0" failed with status 1
> build process 18 exited with status 256
> builder for `/gnu/store/8rss4nxhfjcrhpm6rbdsa2q5zccls0lr-giara-1.0.1.drv' failed with exit code 1
> build of /gnu/store/8rss4nxhfjcrhpm6rbdsa2q5zccls0lr-giara-1.0.1.drv failed
> View build log at '/var/log/guix/drvs/8r/ss4nxhfjcrhpm6rbdsa2q5zccls0lr-giara-1.0.1.drv.gz'.
> guix build: error: build of `/gnu/store/8rss4nxhfjcrhpm6rbdsa2q5zccls0lr-giara-1.0.1.drv' failed
>
> [175/1730] Building CXX object caffe2/CMakeFiles/vec_test_all_types_DEFAULT.dir/__/aten/src/ATen/test/vec_test_all_types.cpp.o
> ninja: build stopped: subcommand failed.
>
> cmake --build . --target install --config Release -- -j 16
> error: in phase 'build': uncaught exception:
> %exception #<&invoke-error program: "python" arguments: ("-c" "import setuptools, tokenize;__file__='setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\\r\\n', '\\n');f.close();exec(compile(code, __file__, 'exec'))" "build") exit-status: 1 term-signal: #f stop-signal: #f>
> phase `build' failed after 98.6 seconds
> command "python" "-c" "import setuptools, tokenize;__file__='setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\\r\\n', '\\n');f.close();exec(compile(code, __file__, 'exec'))" "build" failed with status 1
> build process 18 exited with status 256
> builder for `/gnu/store/djljl1y3vznc4iqwjqgfxvyzfajijgx8-python-pytorch-2.0.1.drv' failed with exit code 1
> build of /gnu/store/djljl1y3vznc4iqwjqgfxvyzfajijgx8-python-pytorch-2.0.1.drv failed
> View build log at '/var/log/guix/drvs/dj/ljl1y3vznc4iqwjqgfxvyzfajijgx8-python-pytorch-2.0.1.drv.gz'.
> building /gnu/store/pm7wagzrxkm5cqv6pfzxklirlw9g5h5p-python-sphobjinv-2.0.1.drv...
> cannot build derivation `/gnu/store/czp80g0kld1kh0c1slrzhih4iilwxmy2-r-torch-0.13.0.drv': 1 dependencies couldn't be built
> guix build: error: build of `/gnu/store/czp80g0kld1kh0c1slrzhih4iilwxmy2-r-torch-0.13.0.drv' failed
>
> error: in phase 'sanity-check': uncaught exception:
> %exception #<&invoke-error program: "python" arguments: ("/gnu/store/iqsjkp55pcx5bfcp2jm9yj5rlx9a0whd-sanity-check.py" "/gnu/store/r5f432953qhamyq4ap9cwk9dz70413rd-python-sphobjinv-2.0.1/lib/python3.10/site-packages") exit-status: 1 term-signal: #f stop-signal: #f>
> phase `sanity-check' failed after 0.2 seconds
> command "python" "/gnu/store/iqsjkp55pcx5bfcp2jm9yj5rlx9a0whd-sanity-check.py" "/gnu/store/r5f432953qhamyq4ap9cwk9dz70413rd-python-sphobjinv-2.0.1/lib/python3.10/site-packages" failed with status 1
> build process 18 exited with status 256
> builder for `/gnu/store/pm7wagzrxkm5cqv6pfzxklirlw9g5h5p-python-sphobjinv-2.0.1.drv' failed with exit code 1
> build of /gnu/store/pm7wagzrxkm5cqv6pfzxklirlw9g5h5p-python-sphobjinv-2.0.1.drv failed
> View build log at '/var/log/guix/drvs/pm/7wagzrxkm5cqv6pfzxklirlw9g5h5p-python-sphobjinv-2.0.1.drv.gz'.
> cannot build derivation `/gnu/store/w6r8nnfv2jvgpy5sd1hykmpyw8w84v28-python-sphinx-autodoc-typehints-1.18.3.drv': 1 dependencies couldn't be built
> building /gnu/store/qh0wprkykp4rxyqwpd8kngyd1sg2d0yp-python-stpipe-0.7.0.drv...
> cannot build derivation `/gnu/store/bwxzrp3m4b2r46sjk7jbhx8x7ka6j1sm-python-cellbender-0.2.2.drv': 1 dependencies couldn't be built
> guix build: error: build of `/gnu/store/bwxzrp3m4b2r46sjk7jbhx8x7ka6j1sm-python-cellbender-0.2.2.drv' failed
> --8<---------------cut here---------------end--------------->8---
Sharlatan Hellseher Sept. 26, 2024, 7:23 a.m. UTC | #3 
Hi Nicolas,

IMHO for the quite a fundamental packages been updated 8 failing is
quite a low amount.

- python-scrapy@2.11.1
- python-funsor@0.4.5
- python-hyperkitty@1.3.5
- python-pytorch-geometric@2.4.0
- python-hicexplorer@3.7.4
- giara@1.0.1
- r-torch@0.13.0
- python-cellbender@0.2.2

It makes sense to merge this series and after CI digests the build fix
all issues separately.

--
Oleg
Andreas Enge Sept. 26, 2024, 7:41 a.m. UTC | #4 
Hello Oleg,

I considered pushing this patch series, but since you have already
downloaded and applied it, I would suggest you do it instead.

Thanks,

Andreas
Sharlatan Hellseher Sept. 26, 2024, 9:32 a.m. UTC | #5 
Hi,

Pushed as e7004f5cf5..c46b23421e to master.

Thanks,
--
Oleg