mbox series

[bug#60885,0/4] Some bioinfo packages

Message ID 20230117172650.1849207-1-zimon.toutoune@gmail.com
Headers show
Series Some bioinfo packages | expand

Message

Simon Tournier Jan. 17, 2023, 5:26 p.m. UTC 
Hi,

Here some pacakages used in Bioinformatics.

Note that the package numbat comes with 'bin/pileup_and_phase.R' for preparing
the data, as explained in online documentation [1].

Here, this script goes under 'site-library/numbat/bin' which does not
perfectly match the online documentation mentioning 'numbat/inst/bin/'
instead.

1: https://kharchenkolab.github.io/numbat/articles/numbat.html

Cheers,
simon

Simon Tournier (4):
  gnu: Add python-vireosnp.
  gnu: Add r-scistreer.
  gnu: Add r-roptim.
  gnu: Add r-numbat.

 gnu/packages/bioconductor.scm   | 106 +++++++++++++++++++++++++++++++-
 gnu/packages/bioinformatics.scm |  22 +++++++
 gnu/packages/cran.scm           |  23 ++++++-
 3 files changed, 149 insertions(+), 2 deletions(-)


base-commit: ecda67a577570f412b103e5dd8ed1a44193a9c11

Comments

Ricardo Wurmus Jan. 20, 2023, 9:56 a.m. UTC | #1 
Thank you for the patches!  I applied them with very minor changes to
descriptions.