From patchwork Thu Apr 28 18:15:39 2022 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: "Paul A. Patience" X-Patchwork-Id: 161 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 91C0527BBEA; Thu, 28 Apr 2022 19:17:20 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.6 (2021-04-09) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.7 required=5.0 tests=BAYES_00,DKIM_INVALID, DKIM_SIGNED,MAILING_LIST_MULTI,SPF_HELO_PASS,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.6 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 568E227BBE9 for ; Thu, 28 Apr 2022 19:17:20 +0100 (BST) Received: from localhost ([::1]:59798 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1nk8hb-0003fv-FF for patchwork@mira.cbaines.net; Thu, 28 Apr 2022 14:17:19 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:37990) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1nk8hK-0003cc-Nz for guix-patches@gnu.org; Thu, 28 Apr 2022 14:17:02 -0400 Received: from debbugs.gnu.org ([209.51.188.43]:56000) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1nk8hK-0004TQ-FV for guix-patches@gnu.org; Thu, 28 Apr 2022 14:17:02 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1nk8hK-00032D-Bq for guix-patches@gnu.org; Thu, 28 Apr 2022 14:17:02 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#55170] [PATCH 0/5] gnu: dealii: Add SUNDIALS dependency and update to 9.3.3. 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Patience" Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Thu, 28 Apr 2022 18:17:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 55170 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 55170@debbugs.gnu.org Cc: ludovic.courtes@inria.fr, paul@apatience.com X-Debbugs-Original-To: guix-patches@gnu.org Received: via spool by submit@debbugs.gnu.org id=B.165116977311594 (code B ref -1); Thu, 28 Apr 2022 18:17:02 +0000 Received: (at submit) by debbugs.gnu.org; 28 Apr 2022 18:16:13 +0000 Received: from localhost ([127.0.0.1]:49897 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nk8gW-00030v-PI for submit@debbugs.gnu.org; Thu, 28 Apr 2022 14:16:13 -0400 Received: from lists.gnu.org ([209.51.188.17]:39172) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1nk8gV-00030n-4G for submit@debbugs.gnu.org; Thu, 28 Apr 2022 14:16:11 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:37858) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1nk8gF-0002Zm-4g for guix-patches@gnu.org; Thu, 28 Apr 2022 14:16:03 -0400 Received: from mail-4022.proton.ch ([185.70.40.22]:51380) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1nk8gA-0004Ob-W7 for guix-patches@gnu.org; Thu, 28 Apr 2022 14:15:53 -0400 Date: Thu, 28 Apr 2022 18:15:39 +0000 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=apatience.com; s=protonmail2; t=1651169742; bh=4342rz3deMnWxRk17hNDlD8Fhb5u1Mmu162ezfLWhAw=; h=Date:To:From:Cc:Reply-To:Subject:Message-ID:Feedback-ID:From:To: Cc:Date:Subject:Reply-To:Feedback-ID:Message-ID; b=oHkdgKAHUZBTbmHYA0tt/8Pbtf7OWm86FsmnxRfqIFwfLUDdcyts9+MSXIHLJ5mJA KHLmh/MAavejbzBQdTFdMGLdyUwsC0Wh7OPkKGhn23wBhNT+TDzVWTwDy1c8FxftXn i9kgfz5UDYkAOOLdanREj6m70NygQZwp707S3soPTzfvP107EjsG3l165A0u9kfFNx 6ohg0fJSxSBJquIMBiLhhNbZeDVUZhYlvEXs3Omy1/zV18odGOykjVMcmEsxn6yM3m qCY0x497InOwA3nLeiPSzSsXj60U/+h4hzqfgphPqkAq5l1rHq+YKPSqje0h83yjSv IvsAWJiSInsCw== From: "Paul A. Patience" Message-ID: <20220428181532.281677-1-paul@apatience.com> Feedback-ID: 19227857:user:proton MIME-Version: 1.0 Received-SPF: pass client-ip=185.70.40.22; envelope-from=paul@apatience.com; helo=mail-4022.proton.ch X-Spam_score_int: -20 X-Spam_score: -2.1 X-Spam_bar: -- X-Spam_report: (-2.1 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, SPF_HELO_NONE=0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Reply-To: "Paul A. Patience" Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches This patch series must be applied on top of the v2 patches in bug#50080 [1]. It adds SUNDIALS to deal.II's dependencies and updates deal.II to the latest version. Unfortunately, and as I mentioned in bug#50080 [1], I cannot get Trilinos to compile, even though it doesn't seem to have changed since commit 06c11434c9288bc70ba958227d47d31d5e46eda7, which added the trilinos-for-dealii-openmpi package. Non-MPI deal.II compiles fine with this patch series. In other words, this patch series is probably fine to push, but we still need to address Trilinos's failing build. I would appreciate it if anyone (Ludovic?) could try building dealii-openmpi (and therefore trilinos-for-dealii-openmpi) with this patch series applied, to check if the problem is only on my end or not. [1]: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=50080 Paul A. Patience (5): gnu: sundials: Add 5.8.0. gnu: dealii: Remove trailing booleans. gnu: dealii-openmpi: Remove input labels. gnu: dealii: Add SUNDIALS dependency. gnu: dealii: Update to 9.3.3. gnu/local.mk | 2 - gnu/packages/maths.scm | 83 ++++++++++++------- ...lii-fix-compiliation-with-boost-1.78.patch | 40 --------- .../patches/dealii-fix-sundials.patch | 60 -------------- 4 files changed, 54 insertions(+), 131 deletions(-) delete mode 100644 gnu/packages/patches/dealii-fix-compiliation-with-boost-1.78.patch delete mode 100644 gnu/packages/patches/dealii-fix-sundials.patch --- 2.36.0