From patchwork Mon Mar 8 17:55:58 2021 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Simon Tournier X-Patchwork-Id: 7 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id E1C0127BC51; Mon, 8 Mar 2021 18:21:31 +0000 (GMT) X-Spam-Checker-Version: SpamAssassin 3.4.2 (2018-09-13) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-2.8 required=5.0 tests=BAYES_00,DKIM_ADSP_CUSTOM_MED, DKIM_SIGNED,FREEMAIL_FROM,MAILING_LIST_MULTI,RCVD_IN_MSPIKE_H3, RCVD_IN_MSPIKE_WL,SPF_HELO_PASS,T_DKIM_INVALID,URIBL_BLOCKED autolearn=unavailable autolearn_force=no version=3.4.2 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTPS id 1D2D627BC50 for ; Mon, 8 Mar 2021 18:21:31 +0000 (GMT) Received: from localhost ([::1]:56024 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1lJKVW-0002sx-3V for patchwork@mira.cbaines.net; Mon, 08 Mar 2021 13:21:30 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]:58596) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1lJK7r-0001Rv-QO for guix-patches@gnu.org; Mon, 08 Mar 2021 12:57:04 -0500 Received: from debbugs.gnu.org ([209.51.188.43]:33194) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1lJK7q-0000Xl-4y for guix-patches@gnu.org; Mon, 08 Mar 2021 12:57:02 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1lJK7q-0002bY-3c for guix-patches@gnu.org; Mon, 08 Mar 2021 12:57:02 -0500 X-Loop: help-debbugs@gnu.org Subject: [bug#47010] [PATCH 00/10] Move some Bioconductor packages to (gnu packages bioconductor). Resent-From: zimoun Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Mon, 08 Mar 2021 17:57:01 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 47010 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 47010@debbugs.gnu.org Cc: zimoun X-Debbugs-Original-To: guix-patches@gnu.org Received: via spool by submit@debbugs.gnu.org id=B.16152261819954 (code B ref -1); Mon, 08 Mar 2021 17:57:01 +0000 Received: (at submit) by debbugs.gnu.org; 8 Mar 2021 17:56:21 +0000 Received: from localhost ([127.0.0.1]:44740 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lJK7A-0002aT-Pn for submit@debbugs.gnu.org; Mon, 08 Mar 2021 12:56:21 -0500 Received: from lists.gnu.org ([209.51.188.17]:51324) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1lJK79-0002aM-ML for submit@debbugs.gnu.org; Mon, 08 Mar 2021 12:56:19 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]:58428) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1lJK78-0000Vs-US for guix-patches@gnu.org; Mon, 08 Mar 2021 12:56:19 -0500 Received: from mail-wm1-x32a.google.com ([2a00:1450:4864:20::32a]:36609) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1lJK76-0000G9-0Z for guix-patches@gnu.org; Mon, 08 Mar 2021 12:56:18 -0500 Received: by mail-wm1-x32a.google.com with SMTP id r15-20020a05600c35cfb029010e639ca09eso4346387wmq.1 for ; Mon, 08 Mar 2021 09:56:15 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=from:to:cc:subject:date:message-id:mime-version :content-transfer-encoding; bh=Mi6MdbfPbaPp6mihnnF1j9xnw6epE0+fZkc0tuMATbM=; b=RhVPK3npfoshsCumqT/BmrCpAld3WIU95LOoO+VltahzdQZIqj+m0PIz+4j1qxpnVy YAK9wPWFN4MmA+n2zY6mgVm3KACAUQ+3sQyxAGAa6VB5xLU0kdjKY4BJ6afciuK8fgMw 5xQONQO9/8LLPXfhEDHVRgCt6vK3f5eBYn/55Twb9BX2StOYlm4XlAwFrR4Gm5ABEkzJ 5s38sTqxKx4bYrtfwmNuMiREbFKvg234rrBYXfTwvJ+5yT1ic3dKw5/zGzD+s1QBPIMB +HsiRT/WoOsUAReoRFMdrnpda66DVB/ZDHaM0g1LpGv9gQVCAH8DwYH6U4q+fE2kIRVY hjJA== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:from:to:cc:subject:date:message-id:mime-version :content-transfer-encoding; bh=Mi6MdbfPbaPp6mihnnF1j9xnw6epE0+fZkc0tuMATbM=; b=WPwm62rn5tLAqlC42Wt+Km9L0c3uoBEmNp1hCe3iZrg5SsGQsoyZGvkvbG/cGex56C qv4SYDkFSNJH02x8/D8m6Pb5sBNhygnHbTTKE3Q2gJzM2QTByulJ4pAQlyZzeVwOV5n4 IQe0EtPGH6TzHDDVyFJiy9tPLtNfNu0p02Blz5ZyQAE10WfxyHHyavYV4cZBL4ZLJD3N H+yMPVCS+ifxXBb0jYHMcjfQx7JbN0uriE29K5+fpUsOoF2XpO8BTUjN0/Us6LRw/qgJ SqWbojBTvkmRNu4NiZv4irS3Pw7gmGWb2xCcOwjng8Q43yI2alYhE/dK7R4iIumTSpbr N4Zg== X-Gm-Message-State: AOAM530KrEXgu3fVcN3v201WUIATwCEChaeS462zVgww61axrAdS3VKU J/CCWxWSE2p7dsJl6eYm8Ck/LHDhFT8= X-Google-Smtp-Source: ABdhPJx94FxzaGOXsXNIw1hUiwcaqEvzSxFj6Y8NJOuw0PIrCVEUdPLBx7H+QcIBZwTxY2Zruybxhg== X-Received: by 2002:a1c:bc06:: with SMTP id m6mr30389wmf.18.1615226174154; Mon, 08 Mar 2021 09:56:14 -0800 (PST) Received: from localhost.localdomain ([193.48.40.110]) by smtp.gmail.com with ESMTPSA id r10sm38563wmh.45.2021.03.08.09.56.13 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Mon, 08 Mar 2021 09:56:13 -0800 (PST) From: zimoun Date: Mon, 8 Mar 2021 18:55:58 +0100 Message-Id: <20210308175558.62461-1-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.30.1 MIME-Version: 1.0 Received-SPF: pass client-ip=2a00:1450:4864:20::32a; envelope-from=zimon.toutoune@gmail.com; helo=mail-wm1-x32a.google.com X-Spam_score_int: -20 X-Spam_score: -2.1 X-Spam_bar: -- X-Spam_report: (-2.1 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, FREEMAIL_FROM=0.001, RCVD_IN_DNSWL_NONE=-0.0001, SPF_HELO_NONE=0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches Hi, Janitor [1] patch set. It moves Bioconductor packages from (gnu packages bioinformatics) to (gnu packages bioconductor). Far to be complete; still 6 pacth set like this one are coming... 1: To transfer the Copyright, I use: git --no-pager log --date=format:"%Y" --format="%ad %an %s" --grep=r- Then, after the move, I run: ./pre-inst-env guix build r- --no-grafts ./pre-inst-env guix build r- --no-grafts --check and at the end of the series, I run: make as-derivation to check that "guix pull" is not broken; just in case. Last, I have not carefully checked the imported modules, so it could be possible to perhaps remove couple of #:use-module (gnu packages ) in gnu/packages/bioinformatics.scm. All the best, simon zimoun (10): gnu: r-genefilter: Move to (gnu packages bioconductor). gnu: r-deseq2: Move to (gnu packages bioconductor). gnu: r-dexseq: Move to (gnu packages bioconductor). gnu: r-annotationforge: Move to (gnu packages bioconductor). gnu: r-rbgl: Move to (gnu packages bioconductor). gnu: r-gseabase: Move to (gnu packages bioconductor). gnu: r-category: Move to (gnu packages bioconductor). gnu: r-gostats: Move to (gnu packages bioconductor). gnu: r-shortread: Move to (gnu packages bioconductor). gnu: r-systempiper: Move to (gnu packages bioconductor). gnu/packages/bioconductor.scm | 354 ++++++++++++++++++++++++++++++++ gnu/packages/bioinformatics.scm | 354 -------------------------------- 2 files changed, 354 insertions(+), 354 deletions(-) base-commit: 612dc6dbe0904f39238a89d3b63ee66abd861b51