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Wed, 30 Oct 2019 03:23:30 -0700 (PDT) Received: from pfiuh02.univ-paris-diderot.fr ([193.48.40.241]) by smtp.gmail.com with ESMTPSA id 65sm3036181wrs.9.2019.10.30.03.23.29 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Wed, 30 Oct 2019 03:23:29 -0700 (PDT) From: zimoun Date: Wed, 30 Oct 2019 11:23:24 +0100 Message-Id: <20191030102324.12437-1-zimon.toutoune@gmail.com> X-Mailer: git-send-email 2.23.0 MIME-Version: 1.0 X-detected-operating-system: by eggs.gnu.org: Genre and OS details not recognized. X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-detected-operating-system: by eggs.gnu.org: GNU/Linux 2.2.x-3.x [generic] X-Received-From: 209.51.188.43 X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches Dear, The aim of this serie is to add the package flowWorkspace. It is important to notice that the package RProtobuflib [1] from BioConductor is not packaged using the correct convention. RProtobuflib includes its dependency protobuf-2.6.0 as an archive tgz and compiles it using its ./configure [2]. Therefore, the file ./configure from the unarchived protobuf-2.6.0 needs to be patched to apply the correct shebang. It is clearly unconventional and we should distribute our own version of RProtobuflib using the correct way i.e., packaging protobuf-2.6.0. However, do we want to diverge to the official BioConductor and add maintenance burden when we are not fully able to already package all the BioConductor archive? All the best, simon [1] https://bioconductor.org/packages/release/bioc/html/RProtoBufLib.html [2] https://github.com/RGLab/RProtoBufLib/blob/trunk/configure#L2860-L2889 zimoun (6): gnu: Add r-idpmisc. gnu: Add r-flowviz. gnu: Add r-rprotobuflib. gnu: Add r-cytolib. gnu: Add r-ncdfflow. gnu: Add r-flowworkspace. gnu/packages/bioconductor.scm | 173 ++++++++++++++++++++++++++++++++++ gnu/packages/cran.scm | 30 ++++++ 2 files changed, 203 insertions(+)