From patchwork Sat May 18 17:25:43 2019 Content-Type: text/plain; charset="utf-8" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit X-Patchwork-Submitter: Pierre Neidhardt X-Patchwork-Id: 13996 Return-Path: X-Original-To: patchwork@mira.cbaines.net Delivered-To: patchwork@mira.cbaines.net Received: by mira.cbaines.net (Postfix, from userid 113) id 3418617027; Sat, 18 May 2019 18:26:07 +0100 (BST) X-Spam-Checker-Version: SpamAssassin 3.4.0 (2014-02-07) on mira.cbaines.net X-Spam-Level: X-Spam-Status: No, score=-1.9 required=5.0 tests=BAYES_00 autolearn=ham autolearn_force=no version=3.4.0 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) by mira.cbaines.net (Postfix) with ESMTP id 246F41701E for ; Sat, 18 May 2019 18:26:06 +0100 (BST) Received: from localhost ([127.0.0.1]:36680 helo=lists.gnu.org) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1hS35x-00048H-CA for patchwork@mira.cbaines.net; Sat, 18 May 2019 13:26:05 -0400 Received: from eggs.gnu.org ([209.51.188.92]:48319) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1hS35v-00047z-1X for guix-patches@gnu.org; Sat, 18 May 2019 13:26:03 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1hS35u-0000dv-77 for guix-patches@gnu.org; Sat, 18 May 2019 13:26:03 -0400 Received: from debbugs.gnu.org ([209.51.188.43]:47596) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_128_CBC_SHA1:16) (Exim 4.71) (envelope-from ) id 1hS35u-0000dk-3p for guix-patches@gnu.org; Sat, 18 May 2019 13:26:02 -0400 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1hS35t-0007qr-Uv for guix-patches@gnu.org; Sat, 18 May 2019 13:26:01 -0400 X-Loop: help-debbugs@gnu.org Subject: [bug#35792] [PATCH 0/7] Package freebayes Resent-From: Pierre Neidhardt Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Sat, 18 May 2019 17:26:01 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 35792 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 35792@debbugs.gnu.org X-Debbugs-Original-To: guix-patches@gnu.org Received: via spool by submit@debbugs.gnu.org id=B.155820035930171 (code B ref -1); Sat, 18 May 2019 17:26:01 +0000 Received: (at submit) by debbugs.gnu.org; 18 May 2019 17:25:59 +0000 Received: from localhost ([127.0.0.1]:32907 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1hS35r-0007qZ-Cx for submit@debbugs.gnu.org; Sat, 18 May 2019 13:25:59 -0400 Received: from eggs.gnu.org ([209.51.188.92]:33906) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1hS35p-0007qN-Mb for submit@debbugs.gnu.org; Sat, 18 May 2019 13:25:58 -0400 Received: from lists.gnu.org ([209.51.188.17]:48606) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32) (Exim 4.71) (envelope-from ) id 1hS35k-0000Xn-J4 for submit@debbugs.gnu.org; Sat, 18 May 2019 13:25:52 -0400 Received: from eggs.gnu.org ([209.51.188.92]:48288) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1hS35j-0003pZ-Jr for guix-patches@gnu.org; Sat, 18 May 2019 13:25:52 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1hS35i-0000We-P4 for guix-patches@gnu.org; Sat, 18 May 2019 13:25:51 -0400 Received: from relay1-d.mail.gandi.net ([217.70.183.193]:59885) by eggs.gnu.org with esmtps (TLS1.0:DHE_RSA_AES_256_CBC_SHA1:32) (Exim 4.71) (envelope-from ) id 1hS35i-0000Uu-Ih for guix-patches@gnu.org; Sat, 18 May 2019 13:25:50 -0400 X-Originating-IP: 92.169.116.19 Received: from localhost.localdomain (lfbn-1-4117-19.w92-169.abo.wanadoo.fr [92.169.116.19]) (Authenticated sender: mail@ambrevar.xyz) by relay1-d.mail.gandi.net (Postfix) with ESMTPSA id A2AE5240005 for ; Sat, 18 May 2019 17:25:43 +0000 (UTC) From: Pierre Neidhardt Date: Sat, 18 May 2019 19:25:43 +0200 Message-Id: <20190518172543.6766-1-mail@ambrevar.xyz> X-Mailer: git-send-email 2.21.0 MIME-Version: 1.0 X-detected-operating-system: by eggs.gnu.org: GNU/Linux 2.2.x-3.x [generic] X-detected-operating-system: by eggs.gnu.org: GNU/Linux 2.6.x X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-detected-operating-system: by eggs.gnu.org: GNU/Linux 2.2.x-3.x [generic] X-Received-From: 209.51.188.43 X-BeenThere: guix-patches@gnu.org List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: guix-patches-bounces+patchwork=mira.cbaines.net@gnu.org Sender: "Guix-patches" X-getmail-retrieved-from-mailbox: Patches Mostly ready for merge except for the FreeBayes test which don't pass because we need grep with PCRE support. Pierre Neidhardt (7): gnu: Add tabixpp. gnu: Add smithwaterman. gnu: Add multichoose. gnu: Add fsom. gnu: Add fastahack. gnu: Add vcflib. gnu: Add freebayes. gnu/packages/bioinformatics.scm | 400 ++++++++++++++++++++++++++++++++ 1 file changed, 400 insertions(+) --- 2.21.0