| Message ID | 20230412210529.30189-1-sharlatanus@gmail.com |
|---|---|
| State | New |
| Headers | show |
| Series | : gnu: python-astroalign: Update to 2.4.2. | expand |
Hello, Sharlatan Hellseher <sharlatanus@gmail.com> writes: > * gnu/packages/astronomy.scm (python-astroscrappy): New variable. > --- > gnu/packages/astronomy.scm | 48 ++++++++++++++++++++++++++++++++++++++ > 1 file changed, 48 insertions(+) > > diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm > index db290f5987..f162be6006 100644 > --- a/gnu/packages/astronomy.scm > +++ b/gnu/packages/astronomy.scm > @@ -1302,6 +1302,54 @@ (define-public python-astroquery > to access online Astronomical data. Each web service has its own sub-package.") > (license license:bsd-3))) > > +(define-public python-astroscrappy > + (package > + (name "python-astroscrappy") > + (version "1.1.0") > + (source > + (origin > + (method url-fetch) > + (uri (pypi-uri "astroscrappy" version)) > + (sha256 > + (base32 "0shmfilvzpmlwz4fh0bx4kqmzr0y39fgga6vipxb5d1rx1y6q6by")))) > + (build-system pyproject-build-system) > + (arguments > + (list > + #:phases > + #~(modify-phases %standard-phases > + (add-after 'unpack 'preparations > + (lambda _ (setenv "HOME" "/tmp"))) > + (add-before 'install 'writable-compiler > + (lambda _ (make-file-writable "astroscrappy/_compiler.c"))) > + (add-before 'check 'writable-compiler > + (lambda _ (make-file-writable "astroscrappy/_compiler.c"))) > + (replace 'check > + (lambda* (#:key inputs outputs tests? #:allow-other-keys) > + (when tests? > + (add-installed-pythonpath inputs outputs) The 'add-install-to-pythonpath' is not needed; this is implicitly already done before the check phase in the python build systems. > + ;; Extensions have to be rebuilt before running the tests. > + (invoke "python" "setup.py" "build_ext" "--inplace") I think it'd be a bit cleaner to move this in a distinct phase named e.g. 'build-extension. Then the check phase of pyproject-build-system could be left alone. If the '--pyargs' argument is really required, it can be provided via the #:test-flags #~(list "--pyargs" "astroscrappy") argument. > + (invoke "python" "-m" "pytest" "--pyargs" "astroscrappy"))))))) > + (native-inputs > + (list python-cython > + python-extension-helpers > + python-h5py > + python-pandas > + python-pytest-astropy > + python-scikit-image > + python-setuptools-scm > + python-scipy)) The last input should appear earlier (sort).
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm index db290f5987..f162be6006 100644 --- a/gnu/packages/astronomy.scm +++ b/gnu/packages/astronomy.scm @@ -1302,6 +1302,54 @@ (define-public python-astroquery to access online Astronomical data. Each web service has its own sub-package.") (license license:bsd-3))) +(define-public python-astroscrappy + (package + (name "python-astroscrappy") + (version "1.1.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "astroscrappy" version)) + (sha256 + (base32 "0shmfilvzpmlwz4fh0bx4kqmzr0y39fgga6vipxb5d1rx1y6q6by")))) + (build-system pyproject-build-system) + (arguments + (list + #:phases + #~(modify-phases %standard-phases + (add-after 'unpack 'preparations + (lambda _ (setenv "HOME" "/tmp"))) + (add-before 'install 'writable-compiler + (lambda _ (make-file-writable "astroscrappy/_compiler.c"))) + (add-before 'check 'writable-compiler + (lambda _ (make-file-writable "astroscrappy/_compiler.c"))) + (replace 'check + (lambda* (#:key inputs outputs tests? #:allow-other-keys) + (when tests? + (add-installed-pythonpath inputs outputs) + ;; Extensions have to be rebuilt before running the tests. + (invoke "python" "setup.py" "build_ext" "--inplace") + (invoke "python" "-m" "pytest" "--pyargs" "astroscrappy"))))))) + (native-inputs + (list python-cython + python-extension-helpers + python-h5py + python-pandas + python-pytest-astropy + python-scikit-image + python-setuptools-scm + python-scipy)) + (propagated-inputs (list python-astropy python-numpy)) + (home-page "https://github.com/astropy/astroscrappy") + (synopsis "Speedy Cosmic Ray Annihilation Package in Python") + (description + "Astro-SCRAPPY is designed to detect cosmic rays in images (numpy +arrays), based on Pieter van Dokkum's L.A.Cosmic algorithm. Much of this was +originally adapted from cosmics.py written by Malte Tewes. This is designed to +be as fast as possible so some of the readability has been sacrificed, +specifically in the C code.") + (license license:bsd-3))) + (define-public python-cdflib (package (name "python-cdflib")