[bug#78951,1/1] gnu: python-pytorch-geometric: Update to 2.6.1-1.8d76e12.
Commit Message
This fixes the python-pytorch-geometric test failures with PyTorch 2.7.0
that were failing with 'AttributeError: module torch.fx._symbolic_trace
has no attribute List'.
* gnu/packages/machine-learning.scm: Import (gnu packages digest).
(python-pytorch-geometric): Update to commit 8d76e12.
[source]: Update hash.
[arguments]: Add 'patch-pyproject-toml phase to fix compatibility with
older flit-core. Update 'delete-top-level-directories phase to check
directory existence before deletion.
[propagated-inputs]: Add python-xxhash.
Signed-off-by: Ayan Das <bvits@riseup.net>
---
gnu/packages/machine-learning.scm | 44 ++++++++++++++++++++-----------
1 file changed, 29 insertions(+), 15 deletions(-)
Comments
Hello,
thanks for your patch! A similar one was sent to Codeberg:
https://codeberg.org/guix/guix/pulls/1174
which I have just pushed, since it works with python-flit-core-next,
so it becomes a little bit easier.
Maybe see you on Codeberg soon!
Andreas
@@ -88,6 +88,7 @@ (define-module (gnu packages machine-learning)
#:use-module (gnu packages curl)
#:use-module (gnu packages databases)
#:use-module (gnu packages dejagnu)
+ #:use-module (gnu packages digest)
#:use-module (gnu packages documentation)
#:use-module (gnu packages freedesktop)
#:use-module (gnu packages gcc)
@@ -5459,18 +5460,20 @@ (define-public python-pytorch-for-r-torch
python-sympy)))))
(define-public python-pytorch-geometric
- (package
- (name "python-pytorch-geometric")
- (version "2.6.1")
- (source (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/pyg-team/pytorch_geometric/")
- (commit version)))
- (file-name (git-file-name name version))
- (sha256
- (base32
- "0dbxz9d22vzm7fr9kgg66hj3sf8ag2ly8qky58cxvn1hyjl5h3v7"))))
+ (let ((commit "8d76e1220665dfc701b14e04b543e9dbaad479ce")
+ (revision "1"))
+ (package
+ (name "python-pytorch-geometric")
+ (version (git-version "2.6.1" revision commit))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/pyg-team/pytorch_geometric/")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "0m0naifd67d0kpvhvpm70k2v35mprx1270wj03i1v22d39xsz722"))))
(build-system pyproject-build-system)
(arguments
(list
@@ -5502,11 +5505,21 @@ (define-public python-pytorch-geometric
" and not test_type_repr"))
#:phases
'(modify-phases %standard-phases
+ (add-after 'unpack 'patch-pyproject-toml
+ (lambda _
+ ;; Older flit-core expects license to be a dict, not a string
+ ;; and doesn't recognize license-files
+ (substitute* "pyproject.toml"
+ (("license = \"MIT\"")
+ "license = {text = \"MIT\"}")
+ (("license-files = .*") ""))))
(add-after 'unpack 'delete-top-level-directories
(lambda _
;; The presence of these directories confuses the pyproject build
;; system.
- (for-each delete-file-recursively
+ (for-each (lambda (dir)
+ (when (file-exists? dir)
+ (delete-file-recursively dir)))
'("conda" "docker" "graphgym")))))))
(propagated-inputs
(list onnx
@@ -5533,7 +5546,8 @@ (define-public python-pytorch-geometric
python-sympy
python-tabulate
python-torchmetrics
- python-tqdm))
+ python-tqdm
+ python-xxhash))
(native-inputs
(list python-flit-core
python-pytest
@@ -5543,7 +5557,7 @@ (define-public python-pytorch-geometric
(description
"PyG is a library built upon PyTorch to easily write and train Graph
Neural Networks for a wide range of applications related to structured data.")
- (license license:expat)))
+ (license license:expat))))
(define-public python-lightning-cloud
(package